Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0064 ATGATGGAGAACAATCTGCTGCTCCTCGTCCTCTGTTTCGTCTCGATTTTTCACTTTCAGGTCTCGTTTAGGGTTCTAGCCCTCTCGCCGGACGGCCTCTCGCTTCTTTCTCTCAAGTCGGCGGTCGATCAGTCGCCCGATTCCTCTGTTTTCTCCGATTGGAACGAGGACGACTCCACGCCTTGCCGATGGTCTGGCATTTCTTGCATGAATGTTTCCGGTGATTCGCGTGTCGTTGGGATTGCGCTCTCCGGTAAGAATCTCCATGGCTACATTCCTTCTGAGCTCGGCTCGCTTGTCTATCTCCGGCGGTTGAACCTCCATAACAACAATTTCTACGGCTCGATACCGGAGCAGTTGTTTAATGCTACCTCATTGCATAGCCTATTTCTCTATAGTAATAATCTCTCCGGTCCTTTTCCCCCTTCGATCTGTAACATTCCGAGGCTTCAAAACCTCGATCTCTCTAACAATTCTCTCGCCGGACCAATCCCCGACGAATTGAAGAATTGCAAGCAATTGCAGCGTTTAATACTCGCCAGAAATCAATTCGAGGGGGAAATTCCTTCTGGTGTGTGGTCCGGGATGGATAATTTACTGCAACTCGATCTCTCATCCAACGATTTCAGCGGACCGATTCCGGAGGATTTAGGGGAACTGAAGACACTTTCCGGTACGCTCAACCTGTCCTTCAATCATTTATCGGGAAAAATTCCGAAGATGCTCGGAGATTTGCCGGTGACGGTAAGTTTTGACCTCCGGAGCAACAATTTAAGTGGAAGCATACCTCAGACGGGTTCGTTTGCGAATCAGGGACCAACTGCATTTCTCAATAATCCCAAGTTGTGCGGATTTCCTCTTCAGAAATCTTGTGAGAGTTCAGAACGTGGCTCACCGGAAAATCCGGATTCTAAGCCATCGTACATTGCTCCTCGAAAAGGCTTGAGCGCCGGATTAATCATTCTCATCTCTGCCGCTGACGCCGCTGGGGTGGCGTTTATCGGCCTGGTAATAGTATACATATACTGGCGAAGGAAAGACAATTCGAACGGCTGTAGCTGTACGGCCAAAGGAAAATTCGGAGGGAACCAGAGAAGCCATCTCTGCAATTTTCCTTGTATGAATGCACATGAAAAGAACGAGGAATCCGAAATGGAGGAACAGGAGAACAGTGACAGAAGCAGAGGGGAAGGAGGGCTTGTGGCCGTAGACAAAGGCTTTACGTTCGAGCTCGACGAGCTGCTGAGAGCATCGGCCTATGTTCTGGGAAAGAGTGGACTCGGGATTGTGTACAAAGTGGTGCTCGGAAATGGGATTCCGGTGGCAGTACGGAGGCTGGGCGAAGGCGGAGAACAGAGGTATAAGGAGTTCGCGGCGGAGGTGCAGGCCATTGGAAGGGTAAAGCATCCCAATATTGTGAAACTGAGAGCTTATTATTGGGCGCCGGATGAGAAGCTACTGATCAGTGATTTCATTTCCAATGGAAACTTGGCCTCTGCACTTCGCGGGAGAAACGGGCAGCCATCTTCAATCCTTTCATGGTCAACAAGACTGCGAATTGCCAAGGGAACCGCTAGGGGGTTGGCCTATCTCCACGAGTGCAGTCCAAGAAAATTCGTCCATGGCGACATCAAGCCCTCCAACATTCTCCTCGACAACGATTTCCAGCCCCACATCTCTGACTTCGGCCTCAACCGCTTGATCAGCATCACCGGCAACAACCCCTCCTCCTCCGGCGGCCTCATCGGCGGCGCCTTCTCATACCTCAAATCCGTCCAAACCGACCGCAACAACAACTACTCCGCGCCGGAGGCCCGAGCCCCCGGCGGCCGCCCGACCCAGAAATGGGACGTCTACTCCTTCGGCGTCATGGTCCTGGAATTGCTCACCGGAAAGTCGCCGGAGCTTTCTCCGAACACGTCGACTTCTTTGGAGATTCCGGATTTGGTGAGGTGGGTCAGGAAAGGATTCGAAGAAGCGAAGCCATTGTCGGATTTGGTTGACCCTGCTCTGCTACAAGAAGTACATGCCAAGAAAGAGGTGCTCGCCGTATTCCACGTGGCGCTCGCCTGTACAGAGAGCGACCCGGAAGTTCGGCCGAGGATGAAAACGGTGTCGGAGAGTTTCGACAGGATTGGGTCGTGA 2145 51.98 MMENNLLLLVLCFVSIFHFQVSFRVLALSPDGLSLLSLKSAVDQSPDSSVFSDWNEDDSTPCRWSGISCMNVSGDSRVVGIALSGKNLHGYIPSELGSLVYLRRLNLHNNNFYGSIPEQLFNATSLHSLFLYSNNLSGPFPPSICNIPRLQNLDLSNNSLAGPIPDELKNCKQLQRLILARNQFEGEIPSGVWSGMDNLLQLDLSSNDFSGPIPEDLGELKTLSGTLNLSFNHLSGKIPKMLGDLPVTVSFDLRSNNLSGSIPQTGSFANQGPTAFLNNPKLCGFPLQKSCESSERGSPENPDSKPSYIAPRKGLSAGLIILISAADAAGVAFIGLVIVYIYWRRKDNSNGCSCTAKGKFGGNQRSHLCNFPCMNAHEKNEESEMEEQENSDRSRGEGGLVAVDKGFTFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVAVRRLGEGGEQRYKEFAAEVQAIGRVKHPNIVKLRAYYWAPDEKLLISDFISNGNLASALRGRNGQPSSILSWSTRLRIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFQPHISDFGLNRLISITGNNPSSSGGLIGGAFSYLKSVQTDRNNNYSAPEARAPGGRPTQKWDVYSFGVMVLELLTGKSPELSPNTSTSLEIPDLVRWVRKGFEEAKPLSDLVDPALLQEVHAKKEVLAVFHVALACTESDPEVRPRMKTVSESFDRIGS 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 467647 470866 - Lag0039860.1 Lac13g0064 591220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0064 714 Gene3D Ribonuclease Inhibitor 192 293 IPR032675 -
Lac13g0064 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0064 714 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515(InterPro)
Lac13g0064 714 Pfam Leucine Rich Repeat 226 245 IPR001611 GO:0005515(InterPro)
Lac13g0064 714 Pfam Leucine Rich Repeat 198 220 IPR001611 GO:0005515(InterPro)
Lac13g0064 714 SMART serkin_6 420 712 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0064 714 SUPERFAMILY Protein kinase-like (PK-like) 421 706 IPR011009 -
Lac13g0064 714 FunFam Leucine-rich repeat receptor-like protein kinase 399 491 - -
Lac13g0064 714 Gene3D Phosphorylase Kinase; domain 1 407 491 - -
Lac13g0064 714 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 28 194 - -
Lac13g0064 714 FunFam Leucine-rich repeat receptor-like protein kinase 198 293 - -
Lac13g0064 714 Gene3D Ribonuclease Inhibitor 30 191 IPR032675 -
Lac13g0064 714 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Lac13g0064 714 Pfam Protein kinase domain 421 643 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0064 714 FunFam Os07g0541700 protein 500 579 - -
Lac13g0064 714 SUPERFAMILY L domain-like 33 288 - -
Lac13g0064 714 CDD STKc_IRAK 422 712 - -
Lac13g0064 714 MobiDBLite consensus disorder prediction 289 309 - -
Lac13g0064 714 ProSiteProfiles Protein kinase domain profile. 416 712 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0064 714 Gene3D Transferase(Phosphotransferase) domain 1 492 714 - -
Lac13g0064 714 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 172 711 IPR046959 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0064 Lac-Chr13:467647 Lac13g0530 Lac-Chr13:3875933 5.40E-109 dispersed
Lac13g0064 Lac-Chr13:467647 Lac8g1491 Lac-Chr8:32253089 5.80E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85837 PF00069 Pkinase 9.00E-32 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0064 - - - 0.0