Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0067 ATGGATGTTCCCGAGGTTGAAGAAATACTTTTTTCTCCCGCTGATGCCAAGTTGCATGGAGATATGTACAAGAAACTCGCTGCAATTTATTGCCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGGAGCAAAACTGGTATTCAGGCTTTATGTTCATTGCATGTAGCTCTTGAGAAGGCCAAGAATACTCTTCGGCATTGCTCAGAATCCAGTAAACTCTACTTGGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAAAAGGCAAGATGTTCACTTGAAGTTAGTCTTATATGCGTTGAAGATATTGTTTCACAATCAATTGGATTTCAGATTCAGCAGATAGTGAACGAACTCAAGGACACTGTTTTCTTACTTGACCCACTTGAAAAACAAATTGGTGATGATATCATTGCATTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGGCATAATGAGCTGGAGCATTTTCATCAGGCTGCCACGAAACTTGGAATTACCTCCTCCAAAGCAGCCCTCACGGAGAGGAGAGCTCTTAAGAGACTTGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTACCTTTTGCATCTCATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGGTGTCAGATGACACTGACTCACAGGGTGGGTCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGACAATGGACTTTCAGCCAATGGTCAAGTTTTTGAACAGCAACTTTCAAAGCTTAGTTCTTTCAATTTTAAGCCAAATTGTACGATATCAGGGCAGATGCCTCTTCCACCCGAGGAATTGAGGTGTCCAATATCATTGCAGCTTATGTATGACCCTGTCATAATTGATTCTGGGCAAACATTTGAAAGGGTTTGCATAGAGAAGTGGTTCAGTGATGGTCATAAAACCTGCCCGAAAACTCAACAGAGGCTCTCGCATCTGTCCTTGACACCTAATTACTCTGTCAAGGGTCTCATTGCTAACTGGTGTGAACATAACGGAGTTCCTATCCCTGATGGCCCACCAAAGTCACTTGATTTGAATTATTGGAGGCTTGCATTGTCTGATTCTGAGTCTGGAAAATCAAGATCTGTGGACCATGTTGGCTCTCGCATGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAGGAAAGTGAAACAATTAAGGTTGCTGAAGAAAATGAAGCAGATGATAATACATATATGGAGGAACCATCTGATTTTATTACACTAGAGAGTTGTGTAAATTTTATGACAGTATTGAATGAAGAGGGAGACTTGAGAAAAAAATGTAAGGTTGTGGAGCAGATAAGACTTTTACTGAAGGATGATGATGATGCCCGAATTTTGATGGGAGCCAATGGCTTTGCCGAAGCACTTATGGAATTTCTAACTTTAGCTCTTATTGAAGAAAACGCTGATGCTCAGGAAAGTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAACAGGGAAACGATGATAGCAGCAGGTGTAATCTCGTTGTTGGAGAACATGATTTTGAAATCCAATTTACATGGACCTGCCACAGCCCTATATTTGAATCTTTCCTGCCTAGAAGATGCCAAACCTATCATTAGTTCAAGTACAGCCGTTTCTTTCCTGATCCAGCTGCTTACTTGTGATGTTCAATCCCAAACTAAGCTCGATGCGCTTCATACCCTTTATAACCTCTCGACCACGCCCTCCGTCGTCCCCGTTCTTCTTTCCGCTGGCATCATTGATGGACTTCAATTCTTTCTCACAACTCCTGGCGACAACATGTGGACAGAGACTTCCTTAGCTGTCTTAATAAACTTAGCTTCAAGCCAGTTGGGAATAGAAGAAATAATCTCAGCTCCGGAGCTCATCAGTGGGTTGGCAGCAATCGTGGATGCTGGCGAACGTGCCGAGCAGGAGCAAGCAGTGTCGTGTTTGTTGATTTTGTGTAGAGGGAGTGAAAAATGCAGTCAAATGGTCTTACAGGAAGGAGTGATTCCCGGATTGGTGGCAATTACGGTAAATGGGACTTCAAGAGGGAAAATAAAAGCTCAGAAACTTCTGCTGTTGTTTAGGGAGCAGAGGCAAAAAGATAACGATATCGTCCAGCAGCGAGATGGAAACACCGACGCATCCATGGCTGCTCCAGAGTCAAAGCCACTGTGCAAATCAGTATCGAAGAAGAAGATGGGGAAAGCATTAAGCTTTTTTGCGAAGAGCAAACGGTTCTCACTATACCAATGTTGA 2304 42.58 MDVPEVEEILFSPADAKLHGDMYKKLAAIYCQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESSKLYLAITGDAVLAKFEKARCSLEVSLICVEDIVSQSIGFQIQQIVNELKDTVFLLDPLEKQIGDDIIALLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRLVERARLEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDTDSQGGSTPCSPTVRCSLEDNGLSANGQVFEQQLSKLSSFNFKPNCTISGQMPLPPEELRCPISLQLMYDPVIIDSGQTFERVCIEKWFSDGHKTCPKTQQRLSHLSLTPNYSVKGLIANWCEHNGVPIPDGPPKSLDLNYWRLALSDSESGKSRSVDHVGSRMLKEVKVVPLEESETIKVAEENEADDNTYMEEPSDFITLESCVNFMTVLNEEGDLRKKCKVVEQIRLLLKDDDDARILMGANGFAEALMEFLTLALIEENADAQESGAMALFNLSVNNNRNRETMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIISSSTAVSFLIQLLTCDVQSQTKLDALHTLYNLSTTPSVVPVLLSAGIIDGLQFFLTTPGDNMWTETSLAVLINLASSQLGIEEIISAPELISGLAAIVDAGERAEQEQAVSCLLILCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKIKAQKLLLLFREQRQKDNDIVQQRDGNTDASMAAPESKPLCKSVSKKKMGKALSFFAKSKRFSLYQC 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 491820 496375 + Lag0039863.1 Lac13g0067 591223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0067 767 Gene3D - 550 711 IPR011989 -
Lac13g0067 767 SMART Ubox_2 283 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g0067 767 Pfam U-box domain 281 350 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g0067 767 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Lac13g0067 767 PANTHER U BOX DOMAIN-CONTAINING 22 714 - -
Lac13g0067 767 CDD RING-Ubox_PUB 281 333 IPR045210 -
Lac13g0067 767 Gene3D - 426 536 IPR011989 -
Lac13g0067 767 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g0067 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Lac13g0067 767 SUPERFAMILY RING/U-box 278 356 - -
Lac13g0067 767 SUPERFAMILY ARM repeat 434 695 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0067 Lac-Chr13:491820 Lac5g2111 Lac-Chr5:39745991 1.60E-53 dispersed
Lac13g0067 Lac-Chr13:491820 Lac6g0745 Lac-Chr6:6319465 6.20E-228 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0067 - - - 0.0