Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0068 ATGTCATTTTTCACGACCATGCCTTCGACAACCTCAGTTTTCTCAGCTTACACAGCCTTCGCCGCTTCATCAATGGTGGCTCGAACAATGATCTCCGAAACCCACACAATCATCTCCCAAATCATTCCCCAAACACTCCACGACAAAGTCTCCTCCAAATTCAACTCCATCTTCGGCTCCATCTCCTCTCAAATGGTTCTCACCATCGACGAGAACAGCGGAATCGCCATGAACGAGCTTTACAGAGCAGCCGAAACCTTTCTCTCCACCAAAATCTCCCCATCGCTGAATCACCTCAGAGCCTCCAAGTCCCCAGGCGACGACAATTTAACCTTCAAAATCAACAATGGCGACGTGCTGATCGACGTCTTCGAAGGAATCGAAATCGCCTGGGAATTGACTTCCACCGAAAAACAGAGCACCTCTTTCGACTGCGAAAGGGGGTCTGAAACTTCCAAAATCGAAAAGCGGCAGTACCGAATCTGCTTCCAGAAGAAGCACAGAGAAACGGTGATGACAATTTACCTTCCGTACGTCTTGGACAGAGCGAAAGCCATAGAGGAAGAAAACAGAGTGGTGAAGCTTTATGCGTTAACGGGGGGATATGGGGATTCGATTGTTCTGCGGAATACTTGCAGTTTTGAGAGTTTGGCTATGGATCCGAAGAAGAAGAGGGAGTTGATGGATGATTTGGACAGATTTGTGGGCAGGAGGGAGTTTTACAGGAGGATTGGGAAGGCTTGGAAGAGAGGGTATCTGCTTTATGGGCCGCCGGGGACTGGGAAATCGAGCTTGGTGGCGGCCATGGCGAATTATCTGAAGTTTAATGTGTATGATTTGGAGCTGACAAGTGTTTGGAACAACGCGGCGCTGAGGAAGATGCTCTTGTCGACGGCAGACAGGTCGATCGTTGTGATTGAGGATATTGATTGCAGTGCTGAGCTTCAGGATCGCGAACGTGGCGAATATGACGACGGTGGCAGCCAGTTGACTTTGTCTGGAGTGTTGAACGCCATTGATGGGCTCTGGTCGAGCTGTGGAGACGCGAGAATAATAGTTTTCACGACGAACCACAAGGAGAAATTGGACCCCGCATTGCTAAGGCCAGGGCGCATGGACATGCACGTGCACATGACTTATTTGACGCCATCTGGCTTCGAGATTCTGGCCTCAAACTATTTGCAGATCGATCGCCATGAACGTTTCGAAGAAATCGAAGAGCTGATAATGGAGGCGGAGGTCACGCCGGCGGAAATTGCAGAAGAGCTCATGAAAAGTGACGATGCTGACGTGGCACTTGAATCGGTCGTGGAATTCGTCAACGGCAAGAAGAGGAAGAAGATGGAAAAGGAGTGCAATTCTGAAGTGATCGCAAACGACGAACAGAGTCCCCAAGATATCGAGGAAGAAGAACCAAAGGGAAAAAGGAGAAACAATAGAAGACGAAAAACTAAAAAGATTTTTAAAAAATAA 1473 48.47 MSFFTTMPSTTSVFSAYTAFAASSMVARTMISETHTIISQIIPQTLHDKVSSKFNSIFGSISSQMVLTIDENSGIAMNELYRAAETFLSTKISPSLNHLRASKSPGDDNLTFKINNGDVLIDVFEGIEIAWELTSTEKQSTSFDCERGSETSKIEKRQYRICFQKKHRETVMTIYLPYVLDRAKAIEEENRVVKLYALTGGYGDSIVLRNTCSFESLAMDPKKKRELMDDLDRFVGRREFYRRIGKAWKRGYLLYGPPGTGKSSLVAAMANYLKFNVYDLELTSVWNNAALRKMLLSTADRSIVVIEDIDCSAELQDRERGEYDDGGSQLTLSGVLNAIDGLWSSCGDARIIVFTTNHKEKLDPALLRPGRMDMHVHMTYLTPSGFEILASNYLQIDRHERFEEIEELIMEAEVTPAEIAEELMKSDDADVALESVVEFVNGKKRKKMEKECNSEVIANDEQSPQDIEEEEPKGKRRNNRRRKTKKIFKK 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 497139 498698 - Lag0039864.1 Lac13g0068 591224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0068 490 MobiDBLite consensus disorder prediction 450 490 - -
Lac13g0068 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 428 IPR027417 -
Lac13g0068 490 Pfam ATPase family associated with various cellular activities (AAA) 252 379 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac13g0068 490 SMART AAA_5 248 382 IPR003593 GO:0016887(InterPro)
Lac13g0068 490 CDD RecA-like_BCS1 227 378 - -
Lac13g0068 490 ProSitePatterns AAA-protein family signature. 350 368 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac13g0068 490 Gene3D - 377 448 - -
Lac13g0068 490 Pfam Domain associated at C-terminal with AAA 42 134 IPR025753 -
Lac13g0068 490 Gene3D - 206 376 IPR027417 -
Lac13g0068 490 PANTHER BCS1 AAA-TYPE ATPASE 25 446 IPR050747 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0068 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0068 Lac-Chr13:497139 Lac1g2949 Lac-Chr1:50336662 1.20E-123 dispersed
Lac13g0068 Lac-Chr13:497139 Lac1g2946 Lac-Chr1:50308273 8.60E-114 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1183 . . . . . . . . . . . . . . . . . Bhi07g01899 Tan04g0078 Cmetu10g0910 Lac13g0068 Hepe10g1530 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000531 0 2 1 2 1 4 1 7 5 4 3 5 2 3 7 3 5 0 1 5 5 2 3 6 7 7 5 5 5 5 111