Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0072 ATGTTAATTTGTGAAGGAGCTGGAGGCGGTCATGCTCCAGATATTATCCGAGTATGCAGTCTGAAAAATGTGCTGCCTTCATCAACTAATCCAACACGACCGTTCACATTGAATACTATAGATGAACATCTTGACATGCTGATGGTGTGCCATCATCTTGATCCCAATATTGAAGAAGATGTAGCTTTTGCCGAATCAAGGATAAGGAAGGAAACTATTGCTGCAGAAGATATTTTGCATGATTTGGGAGCAATTAGTATGATATCTTCTGATTCACAGGCCATGGGCCGCATCGGAGAGGTGATTAGCAGAACATGGCAAACTGCACACAAAATGAAGTTGCAAAGAGGATCGCTTGATTACGGGAAACCAGAAAATGACAACCTTCGGATCAAGCGATATATCTCCAAATATACCATAAATCCAGCCATAGCAAACGGGTTTTCTCAATATATTGGTTCAGTAGAGGTAGGGAAGTTGGCTGATCTTGTTCTGTGGAAGCCATCATTTTTTGGGGCAAAACCAGAAAAGGTGATTAAAGATGGTACAATTGCATGGGCCAACATGGGTGATCCAAATGCAAGCATTCCCACACCTGAACCGGTAAAATTCTATTAG 618 41.75 MLICEGAGGGHAPDIIRVCSLKNVLPSSTNPTRPFTLNTIDEHLDMLMVCHHLDPNIEEDVAFAESRIRKETIAAEDILHDLGAISMISSDSQAMGRIGEVISRTWQTAHKMKLQRGSLDYGKPENDNLRIKRYISKYTINPAIANGFSQYIGSVEVGKLADLVLWKPSFFGAKPEKVIKDGTIAWANMGDPNASIPTPEPVKFY 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 528278 530048 + Lag0039868.1 Lac13g0072 591228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0072 205 PANTHER UREASE 4 203 IPR050112 -
Lac13g0072 205 PRINTS Urea amidohydrolase (urease) protein signature 158 171 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Lac13g0072 205 PRINTS Urea amidohydrolase (urease) protein signature 65 81 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Lac13g0072 205 PRINTS Urea amidohydrolase (urease) protein signature 132 147 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Lac13g0072 205 PRINTS Urea amidohydrolase (urease) protein signature 26 43 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Lac13g0072 205 Pfam Amidohydrolase family 3 182 IPR006680 GO:0016787(InterPro)
Lac13g0072 205 Gene3D - 1 180 - -
Lac13g0072 205 SUPERFAMILY Metallo-dependent hydrolases 4 164 IPR032466 -
Lac13g0072 205 SUPERFAMILY Composite domain of metallo-dependent hydrolases 153 202 IPR011059 GO:0016810(InterPro)
Lac13g0072 205 ProSiteProfiles Urease domain profile. 1 205 IPR017951 GO:0009039(InterPro)|GO:0016151(InterPro)
Lac13g0072 205 ProSitePatterns Urease active site. 48 64 IPR017950 GO:0009039(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0072 K01427 - - csv:101209590 355.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0072 Lac-Chr13:528278 Lac13g0074 Lac-Chr13:540453 1.20E-98 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49