Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0085 ATGTCATTGCATATTCAGAAGAATCTTAAGAGCATTTGCGGCGTTCTTGATCGTTGTAAACCATCTGCCTGTCTTCATGTATCATCTCAAAGCTGCTCCCATGCCCTTTTCTCTGCAAATTTTTCGTCTCCGCTAGAACCTTCCATATTTGTAAGAGCTACAGATTTGCAGCAAAGAATACCTTCTGAATGTCAGACAAAACTTTCTGATATTGATTTGATCATTTCTAAAGTTCGGGTGGGTAGCAGCGAGGATGAAGTTTTTCAGTCACTCTTGCACGATCAAGCGTGTAATAGCATACAGTTCTCCCATGAACTTGTTTACAAACTGCTCAATCGTTTCAAAGACGATTGGAAGTCTGCTTTGGGTGTTTTTAGATGGGCGGAGTCACTCTCTGGATTCAAGCACTCGCCAGATTTATATGACATTATAATAGATACATTGGGCAAAACAAAGCAAATGGTCAAGATGAGAGGCATGCTAGAAGAAATGAAGGAAGCTCGCATTGTGACGCTTGATACTGTAGCTAAGGCTATGCGAAGGTTTGCTGGTGCTGGACAATGGGAAGATGCTGTAAGGATATTTGATGATTTGGGAACTTTTGGGTTGGAGAAGAACACTGAATCTATGAATGTTTTGCTTGATACTCTGTGCAAAGAGAAGAAGGTCGAGCAAGCTCGACAGATATATTTGGATCTCAAATCACATATTTCCCCAAATGCCAACACGTTCAATATTTTTATTCATGGTTGGTGTAAAGTTGATAAGGTTGATGAGGCACATTGGACGTTACAAGAGATGAAAGGGCATGGTTATCGTCCCTGCGTCATTAGTTATTCAACGATTATCCTATTTTATTGTCGTCATTACAACTTCAATAAGGTTTATGAGTTGCTTGATGAAATGGATGCTCAAGGATGCCCAGCAAATGTCATCACTTACACAACCATCATGTGCTCGCTAACAAAGTCAGAAGAATTTGAGGAAGCTCTGCAAATTGCTGAGAGAATGAAATCTGCTGGATGTGAACCCGATACACTTTCTTATAATTGTTTGATCCATACGTTAGGGAGAGCGGGTAAAGTACGGGAAGCTATTCATGTATTCGAAGTAGAAATGCCGAGCAAGGGTGTTTTACCAAATACATCGACCTACAATTCGATGATTTCTATGTACTGTCATCGTGCGCAAGAACAAAAGGCTATGAAACTGCTTGAGGATATGGAGAATTCCGGGGTTTGTAAGCCTGACGTCCAGACATATTACCCATTGCTTAAATCTTGCTTTAGAACTGGAAAGACAGATTATGTTTTGAGCAAGTTATTGGATGACATGATGAATAAACACCATCTGAGTCTTGATATATCAACCTATTCCCTTCTAATACATGGCCTTTGTAGAGCAAATAAGTGTGAGTGGGCTTACCAGCTATTTGAGAAGATGATTGGTCAAGATATAAAGCCAAGATACCTTACATGTCAACTGCTTTTGGATGAAGTTAAGGAGAAGAACATGGATGAAATTGCTGGTAGGATTGAAGATATCATGAAGAAACTTTGA 1560 39.81 MSLHIQKNLKSICGVLDRCKPSACLHVSSQSCSHALFSANFSSPLEPSIFVRATDLQQRIPSECQTKLSDIDLIISKVRVGSSEDEVFQSLLHDQACNSIQFSHELVYKLLNRFKDDWKSALGVFRWAESLSGFKHSPDLYDIIIDTLGKTKQMVKMRGMLEEMKEARIVTLDTVAKAMRRFAGAGQWEDAVRIFDDLGTFGLEKNTESMNVLLDTLCKEKKVEQARQIYLDLKSHISPNANTFNIFIHGWCKVDKVDEAHWTLQEMKGHGYRPCVISYSTIILFYCRHYNFNKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAERMKSAGCEPDTLSYNCLIHTLGRAGKVREAIHVFEVEMPSKGVLPNTSTYNSMISMYCHRAQEQKAMKLLEDMENSGVCKPDVQTYYPLLKSCFRTGKTDYVLSKLLDDMMNKHHLSLDISTYSLLIHGLCRANKCEWAYQLFEKMIGQDIKPRYLTCQLLLDEVKEKNMDEIAGRIEDIMKKL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 622506 624065 - Lag0039881.1 Lac13g0085 591241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0085 519 Pfam PPR repeat family 344 394 IPR002885 -
Lac13g0085 519 Pfam PPR repeat family 274 321 IPR002885 -
Lac13g0085 519 Pfam PPR repeat family 206 253 IPR002885 -
Lac13g0085 519 NCBIfam pentatricopeptide repeat 243 274 IPR002885 -
Lac13g0085 519 NCBIfam pentatricopeptide repeat 384 417 IPR002885 -
Lac13g0085 519 NCBIfam pentatricopeptide repeat 348 382 IPR002885 -
Lac13g0085 519 NCBIfam pentatricopeptide repeat 312 346 IPR002885 -
Lac13g0085 519 NCBIfam pentatricopeptide repeat 141 170 IPR002885 -
Lac13g0085 519 NCBIfam pentatricopeptide repeat 457 488 IPR002885 -
Lac13g0085 519 NCBIfam pentatricopeptide repeat 277 310 IPR002885 -
Lac13g0085 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Lac13g0085 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Lac13g0085 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Lac13g0085 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Lac13g0085 519 Pfam PPR repeat 141 168 IPR002885 -
Lac13g0085 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Lac13g0085 519 Pfam PPR repeat 451 481 IPR002885 -
Lac13g0085 519 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Lac13g0085 519 Gene3D Tetratricopeptide repeat domain 234 303 IPR011990 GO:0005515(InterPro)
Lac13g0085 519 Gene3D Tetratricopeptide repeat domain 304 372 IPR011990 GO:0005515(InterPro)
Lac13g0085 519 Gene3D Tetratricopeptide repeat domain 81 233 IPR011990 GO:0005515(InterPro)
Lac13g0085 519 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 102 370 - -
Lac13g0085 519 Gene3D Tetratricopeptide repeat domain 373 518 IPR011990 GO:0005515(InterPro)
Lac13g0085 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 380 IPR002885 -
Lac13g0085 519 Pfam Pentatricopeptide repeat domain 403 445 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0085 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0416 Lac-Chr10:3267739 Lac13g0085 Lac-Chr13:622506 6.00E-12 dispersed
Lac13g0085 Lac-Chr13:622506 Lac7g0718 Lac-Chr7:5793266 2.10E-25 dispersed
Lac13g0085 Lac-Chr13:622506 Lac2g0977 Lac-Chr2:7739980 1.00E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1144 . . . . . Bpe10g00778 . Bma15g00243 . . . . . Car18g00665 Sed06g0134 Cpe09g00570 . Bhi07g01872 Tan04g0097 Cmetu10g0012 Lac13g0085 Hepe10g1542 . . Cla05g02634 Cam05g2827 . Cco05g2896 Clacu05g2832 Cmu05g2679 Cre05g2795 . Cone19ag1108 . . Lsi04g00655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011749 1 1 0 2 1 0 2 1 1 1 1 1 1 0 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 30