Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0089 ATGGAGTGGTCGTGTCTACGTATCAATTTTCTTTTTGACATTGTCTTCTTCCTAGCACTCATCATCTTAGTGGCCCTTCCTAGATCAGCAATTAATCCAAGCTTAGCAGGATTAGCAGCCACATATGCTTTGAACATGAACATTGTTCAGGCTTGGGTGATCTGGAATTTATGCAATGTTGAAAACAAAATGATATCTGTTGAGAGAATCCTTCAATTCACAAACATTGCTTCTGAGGCGCCACCAGTGATCGAAGGCTGTAGGCCAATGCCAGAATGGCCAGAGGAGGGAAGGATAGAACTTGAAAACCTTCATGTTCAATACAGTCCTAATCTTCCAATGGTTCTCAAAGGGATCACTTGTACCTTCCCAAAAAGGAAGAAAATTGCTGTTGAGGGCCGGACTGGAAGTGGAAAGTACACCTTAATCCAAGCACTTTTTAGGGTGGTAGAGCCATCTGCAGGAAGGATTCTCATTGATGGAGTTGACATTTGCAAAATGGGTCTACATGACAACCTGAGGTCTAGGTTGGGTATTATTCCACAAGACCTAACATTGTTCCAAGGAACCATGAGAACTAGCCTAGAGCCTTAA 594 42.76 MEWSCLRINFLFDIVFFLALIILVALPRSAINPSLAGLAATYALNMNIVQAWVIWNLCNVENKMISVERILQFTNIASEAPPVIEGCRPMPEWPEEGRIELENLHVQYSPNLPMVLKGITCTFPKRKKIAVEGRTGSGKYTLIQALFRVVEPSAGRILIDGVDICKMGLHDNLRSRLGIIPQDLTLFQGTMRTSLEP 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 644195 644928 - Lag0039885.1 Lac13g0089 591245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0089 197 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 197 IPR050173 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Lac13g0089 197 Gene3D ABC transporter type 1, transmembrane domain 1 80 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Lac13g0089 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 193 IPR027417 -
Lac13g0089 197 Gene3D - 84 197 IPR027417 -
Lac13g0089 197 Pfam ABC transporter 116 190 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0089 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0089 Lac-Chr13:644195 Lac7g0387 Lac-Chr7:3005754 2.40E-67 dispersed
Lac13g0087 Lac-Chr13:625711 Lac13g0089 Lac-Chr13:644195 4.40E-97 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1141 . . . . . . . . Cmo04g01910 Cmo18g00707 . Cma18g00720 . Car18g00666 . Cpe09g00569 Cpe01g01598 Bhi07g01868 . . Lac13g0089 Hepe10g1543 . . Cla05g02633 . Cec05g2863 Cco05g2895 Clacu05g2831 Cmu05g2678 . . . . . Lsi04g00654 . . Cme10g00632 Blo06g00821 Blo11g00984 . . . . . . . . . Cma04g01814 . Car04g01826 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020816 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 1 0 4