Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0094 ATGGCCGTCGGAATCCGAATCATTTCAAAAGAAACAATCAAACCCTCCTCCCCGACGCCGGACCACCTCCGCCGTTACAGTCTATCCTTCCTCGACCAAGTCACCGTCGACGTCTACAACCCAATGGTCTATTTCTTCGCTGCGGGCGCCGCCACCGCCGCCGAAATTGCCGACCTCCTCAAAAACTCCCTCTCCGACGTGCTGTCCAAATTCTACCCTCTCGCCGGCCGAGCCAACTACGACGAGTTTTTCATCGACTGCAACGACGCCGGCGTCCCCTTCATCGAAACCAGAGTCGACTGCCGAGTCTCCGATGTAATCAACACGCCGTTTCCTTCTGAATTAAACAAATTCCTTCCGTTCGAATTGGACGAGCTTGACGACGTTTCGATGGGGGTTCAGTTGAATGTGTTCGAATGCGGCGGCGTTGCTGTGGGAATTTGTATTTCTCACAAGATCAGTGATGCTCTGTCGTTTTTCACCGTCGTTAATGGGTGGGCGGCGTTTTGCCGAGGGGATACGGAGGCGCTGCGGCCGCATTTATCGTCGGCGGAGATTTTCCCACCGTTGACGACGCCGGTTGACAATAGGAGGAGGGCTGGTATTTTCAGGCAGAGAGTGGCGAAACGGTACGAGATTGACGGTGTGAATGTTGAAGCTATTCGAACTAAATATGCAGAGAGCGCCGCCATGGAAAACCAGAGGCGGCCTTCGAGAGTGGAGGCCTTGTCGGCCTTCCTCTATGGCCGTTTTCTTGCCGCCATTAAAGCCGCTTCCAAGAGCAATCTCGAGAATGGAAGCTCGGAATCAGAGAAGAAGAAGATATACTTAGTCTGTCACGCAGTAAACATCCGGTCGAGACTCGACCCACCAATTCCCAACTACGCCTTCGGAAACTATTACCGAACCACCTTCGCAACTCCCTCCGATGAGATTCTGAACGACGATTACTGCCACGATCTAATCAAGAAGGCGCGAGAAGAAATCGGCAAAATCGACGAAGAATATCTGAAAAAGATTCAAGAGAGCTCCAGGTTCGTCGATTCCATGAAAAGAACCGCGACTCAGTTCGCCACCGGCGAGCTGATCTCCTGCGCCTTCACGAGCCTCTGCCGAATGCCGATCTACGACACCGATTTCGGGTGGGGAAAACCCGTCAGGATCGGGTCCCCGGCGTTGATGTTCAAGAACCTGTTCGTGTTGATGGATAAGAAGGATGGCGATGGCGTCGATGTTTATGTTCATTTGAAAGAAGAGGACATGGCCGAGTTTGAAGCCGATGAGGAGTTTCTTAAGTATGCGAGGCCGCCTTGTTTCAATTCTTCCCCTCGCAAGGCCTGA 1341 52.72 MAVGIRIISKETIKPSSPTPDHLRRYSLSFLDQVTVDVYNPMVYFFAAGAATAAEIADLLKNSLSDVLSKFYPLAGRANYDEFFIDCNDAGVPFIETRVDCRVSDVINTPFPSELNKFLPFELDELDDVSMGVQLNVFECGGVAVGICISHKISDALSFFTVVNGWAAFCRGDTEALRPHLSSAEIFPPLTTPVDNRRRAGIFRQRVAKRYEIDGVNVEAIRTKYAESAAMENQRRPSRVEALSAFLYGRFLAAIKAASKSNLENGSSESEKKKIYLVCHAVNIRSRLDPPIPNYAFGNYYRTTFATPSDEILNDDYCHDLIKKAREEIGKIDEEYLKKIQESSRFVDSMKRTATQFATGELISCAFTSLCRMPIYDTDFGWGKPVRIGSPALMFKNLFVLMDKKDGDGVDVYVHLKEEDMAEFEADEEFLKYARPPCFNSSPRKA 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 673674 675517 - Lag0039890.1 Lac13g0094 591250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0094 446 Gene3D - 1 196 IPR023213 -
Lac13g0094 446 PANTHER F21J9.9 5 434 - -
Lac13g0094 446 Pfam Transferase family 5 430 - -
Lac13g0094 446 Gene3D - 205 432 IPR023213 -
Lac13g0094 446 Coils Coil 322 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0094 K13065 - - csv:101218593 674.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0094 Lac-Chr13:673674 Lac3g0118 Lac-Chr3:847452 1.50E-77 dispersed
Lac10g0358 Lac-Chr10:2807103 Lac13g0094 Lac-Chr13:673674 9.40E-64 transposed
Lac4g2087 Lac-Chr4:40561954 Lac13g0094 Lac-Chr13:673674 5.20E-62 transposed
Lac13g0094 Lac-Chr13:673674 Lac6g0718 Lac-Chr6:6094058 2.80E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1130 . Blo16g01184 . . . . . . . . . . . . Sed04g0539 . Cpe01g01593 Bhi07g01861 Tan04g0104 Cmetu10g0799 Lac13g0094 Hepe10g0071 . . Cla05g02630 Cam05g2822 Cec05g2857 Cco05g2890 Clacu05g2825 Cmu05g2673 Cre05g2790 Cone13ag1116 Cone19ag1102 . . . . . Cme10g00626 . . . . . . . . . . . Cma04g01809 . Car04g01822 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001045 1 3 2 1 1 3 2 3 3 4 2 3 2 4 4 1 3 4 2 3 4 2 3 4 2 5 3 2 3 2 81