Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0098 ATGGGGTTTCCTCGTTTTTTGGTTTTGATTCTTCTCGTCGTTTCTTCTGTCGATTGTCAGGTTAAAGAGTTCGTCAGTATAGACTGTGGTGGCGCGAAGAACTACACCGACCCAGTTACAGGGCTGGGATGGATTTCCGACGCCGGAATCATGGCCGCCGGCGGGTCGTCGCCGGTGGAAAACCCAAATGGGAACTTGATGCAGTACCAAACGCGGCGGGATTTCCCAATCGATGACAAGAAGTACTGTTACACTTTGAACACAGAGGAAAGAAGGAGATATTTGGTTAGAGCAACTTTTCAGTATGGGAGTTTGAAAAATGAAGAGACTTACCCTAAGTTTCAGCTTTATTTGGATGCAACTAAGTGGTCGACTGTTACGATTTTTGATGCTTCGAGAGTTTATGTGAAGGAGATGATCATCAGAGCACCTTCAAATTCGTTTGATGTTTGCATATGCTGTGCAACTACTGGTTCTCCATTTATATCCACTCTTGAGCTTCGCCCTTTTAATCTTTCTATGTATGCAACTGATTTTGAAGATAATTTCTTCTTGGAAGTGGCTGCTAGAGTGAATTTTGGGGCTCTCACCAAGGATGTGATAAGGTACCCAGATGATCCATATGACAGAATTTGGGATTCCGACCTTGAGAAGAGGCAAAATTATCTTGTGGGGGTGGCTCCTGGGACAGAAAGAATCAGTACTTTGAACAACATTAATGTAATGACAAGAGAATATCCGCCTGTTAAGGTGATGCAAACTGCAGTTCTTGGCACAAAAGGAGTGCTCAGCTACAGATTGAATTTGGATGATTTTCCTGCCAATGCCAGGGCTTATGCATATTTTGCTGAAATTGAAGATTTGGGTTGGAATGAAACTCGGAAGTTCAAATTGGAGGAACCAAACATTCCGGACTCGAGCAATGCAGTAGTGAATATTGCTGAGAATGCCAATGGGACCTATACTCTTTATGAACCAAGTTATATGAATGTGACTCTGAGTTTCGTGCTTTCGTTCTCCTTTGTCAAGACTCGAGATTCGACTCGAGGACCACTTTTGAATGCATTGGAAATTAGCAGATATGTTGAGATTGCTGCCAAGACTGATAGGCGAGATGAGACTGTTGTGAATGGCTTCCGTAACATGTCAGCAGAGAGTGTTTGGACAAATGAAGGCGATCCTTGTGTTCCAACGAGCTGGGAGTGGTTGACTTGTACTGCCACGAGACCGCCGAGAGTAACTAAAATTGAACTTTCCAGAAAGAATGTCGAGGGCGAAATTCCACCCGAGATCAATTCTATGGATGGGTTAACAGAATTGTGGTTAGATGGTAATTCCCTTGCAGGACCTCTGCCTGACATGAGTAATCTAATAAACTTGAAGATTTTACATCTAGAGAATAACAAATTGACAGGGACATTACCTTCTTACCTGGGTAGTTTGCCCAACTTACAGGAACTATATATTCAAAACAATACGTTTTCGGGTGAAATACCTTCAGAATTACTGGCAAAGAAACTCATCTTTAAGTACGACGGTAACTTGGGGCTGCACAAAAGTAAACAATACAATATGCATTCTAAGCTTGTAATAGGAGTTTCATTGGGAGTCCTTGTGCTTCTGATCATTCTACTTTTAGGGAGTTTGCTGTTACTCCGCAAGGTTCGAAGAAGAACGACGCCGTACCAGAAAAAAGGCGGTTCTCTGCAAACCAGCACCAAGCGCTCTTCTGGATACTCCATCGGCAAGGGGGACGAAGGCGTTGCCTACTATTTATCTCTCTCCGAGCTGGAAGAAGCAACGAATAACTTTTCTAAGAAAATTGGTAAAGGCAGCTTTGGTTCAGTCTATTATGGGAAGATGGCAGACGGAAAAGAAGTGGCAGTTAAAATCATGGCTGAGTCATCTGCACATGGGAATCAGCAATTTATGACCGAGGTTGCCCTCTTATCAAGAATTCATCACCGAAATTTGGTCCCTTTGATCGGGTTTTGCGAAGAAGAACATCAACGGATTCTGGTTTATGAATATATGCATAATGGAACGTTGCGAGATCACTTATATGGTTGTACCAATCAGAAGCACTTAGACTGGCTGGCTCGCCTGCACATTGCAGAAGATGCAGCTAAAGGGCTCGAGTATTTGCACACGGGATGCAGCCCGAGTATCATTCATCGAGATGTAAAAACAAGCAACATCCTCCTAGACATCAATATGAGAGCAAAAGTTTCCGACTTTGGACTCTCGAGGCAAGCCGAGGAGGATTTGACCCATGTATCAAGCGTTGCTCGAGGAACAGTAGGCTACTTGGATCCCGAGTACTATGCCAGTCAACAACTGACCGAAAAGAGCGACGTGTATAGTTTTGGAGTGGTTCTACTTGAACTGATCTCCGGGAAGAGACCTGTCTCACCAGAAGACTATGGCAGTGAATTGAACATCGTTCACTGGGCGAGGTCTCTTGTCCATAAAGGGGACGTGACGAGCATCGTAGATCCATTTCTAGAAGGAAACGTCAAAATCGAATCCGTGTGGAGAATTGCTGAAGTTGCCATACAGTGTGTGCAGCAGCATGGAGTTTCCAGGCCAAGGATGCAGGAAGTCATTGTGGCCATACAAGATGCAATCAAGATTGAACATGGCACTGAAGGAAACCAGAAACTATCTTCAGGCAGTTCAAAAGCACAGTCATCTCGGAAAACTTTGCTGACGACGTTTCTCGAAATCGAGAGCCCCGACGGTTCCCTCCTTCCCTCTGCAAGATAA 2766 44.22 MGFPRFLVLILLVVSSVDCQVKEFVSIDCGGAKNYTDPVTGLGWISDAGIMAAGGSSPVENPNGNLMQYQTRRDFPIDDKKYCYTLNTEERRRYLVRATFQYGSLKNEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIIRAPSNSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDNFFLEVAARVNFGALTKDVIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERISTLNNINVMTREYPPVKVMQTAVLGTKGVLSYRLNLDDFPANARAYAYFAEIEDLGWNETRKFKLEEPNIPDSSNAVVNIAENANGTYTLYEPSYMNVTLSFVLSFSFVKTRDSTRGPLLNALEISRYVEIAAKTDRRDETVVNGFRNMSAESVWTNEGDPCVPTSWEWLTCTATRPPRVTKIELSRKNVEGEIPPEINSMDGLTELWLDGNSLAGPLPDMSNLINLKILHLENNKLTGTLPSYLGSLPNLQELYIQNNTFSGEIPSELLAKKLIFKYDGNLGLHKSKQYNMHSKLVIGVSLGVLVLLIILLLGSLLLLRKVRRRTTPYQKKGGSLQTSTKRSSGYSIGKGDEGVAYYLSLSELEEATNNFSKKIGKGSFGSVYYGKMADGKEVAVKIMAESSAHGNQQFMTEVALLSRIHHRNLVPLIGFCEEEHQRILVYEYMHNGTLRDHLYGCTNQKHLDWLARLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYASQQLTEKSDVYSFGVVLLELISGKRPVSPEDYGSELNIVHWARSLVHKGDVTSIVDPFLEGNVKIESVWRIAEVAIQCVQQHGVSRPRMQEVIVAIQDAIKIEHGTEGNQKLSSGSSKAQSSRKTLLTTFLEIESPDGSLLPSAR 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 688584 693970 + Lag0039894.1 Lac13g0098 591254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0098 921 ProSiteProfiles Protein kinase domain profile. 602 876 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0098 921 FunFam receptor-like serine/threonine-protein kinase NCRK 581 677 - -
Lac13g0098 921 Pfam Malectin-like domain 27 359 IPR024788 -
Lac13g0098 921 PANTHER OS07G0107800 PROTEIN-RELATED 454 880 - -
Lac13g0098 921 CDD STKc_IRAK 608 869 - -
Lac13g0098 921 ProSitePatterns Protein kinases ATP-binding region signature. 608 630 IPR017441 GO:0005524(InterPro)
Lac13g0098 921 Gene3D Ribonuclease Inhibitor 374 516 IPR032675 -
Lac13g0098 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0098 921 Pfam Leucine Rich repeats (2 copies) 459 495 IPR025875 -
Lac13g0098 921 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 678 885 - -
Lac13g0098 921 SUPERFAMILY L domain-like 395 502 - -
Lac13g0098 921 Pfam Protein tyrosine and serine/threonine kinase 604 869 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0098 921 SMART serkin_6 602 876 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0098 921 SUPERFAMILY Protein kinase-like (PK-like) 589 870 IPR011009 -
Lac13g0098 921 Gene3D Phosphorylase Kinase; domain 1 581 677 - -
Lac13g0098 921 Gene3D Transferase(Phosphotransferase) domain 1 678 896 - -
Lac13g0098 921 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 408 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0098 Lac-Chr13:688584 Lac4g2949 Lac-Chr4:47826956 4.50E-108 dispersed
Lac7g2833 Lac-Chr7:47466282 Lac13g0098 Lac-Chr13:688584 1.20E-58 dispersed
Lac10g3051 Lac-Chr10:45001458 Lac13g0098 Lac-Chr13:688584 1.80E-245 transposed
Lac4g2080 Lac-Chr4:40490338 Lac13g0098 Lac-Chr13:688584 1.30E-94 transposed
Lac11g0583 Lac-Chr11:5926640 Lac13g0098 Lac-Chr13:688584 9.20E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85839 PF12819 Malectin_like 6.40E-87 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0098 - - - 0.0