Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0100 ATGTCTGAGAATCATGATCCAGAGCAGGCGCTGCAGAGTTCAGGAAGTGGAGCTGAAGATGGAGATAAAGGGGTGGAAACTGTGCTCAATGTTGATGTTATGGAGTCATCCTCTGAGACTGCCGTGGACACTGTTTCGGAGAATGACTCCGTTTTGCAGTCCTCTGAAGTGTCCAGTGGATTTGTCCCGTCCGAACCAAACCAGGGATCAACGATGTCGCCAGTGGCTCCTCTTGCGGAAGGTGCAGAGAACTCAGGACAAGATGACCCTGATGAAACTGTAGTAGTCGAAGATGCTGGAAAAGAAGATATGTTTGTGGACTGCCCGGATGAGTTAGTTGGCAATGCTGATATCAGAGAAGCAGCAGCAGCTGTTGAAACTGAAGGTAGTTTGACGGAGGAAAAACCTTCTGATATGCAGGAATTACAGTATGAGGTAGAAAATGTTTCTCTGATGAACGAGGTGGAAAACACGAGGGCCACTCTGGACAAGACCATTTTTGAGAAAGAAAATGCCATTCACGAGTTTGAGGAAGAAAGAGAGGCTTTTGTCAAAGAACTTCTTAGAATTTGTCACCAACTCAAGACTGCTACTAACCAACAGTCATTATTCAATGTGACTGGCAGTCAGTTGAATGAGAGTCTTCATTTGCAAGAAGTTGAGCATGTGGAGAACACTATGGTTACTAATATCACATTGAAAGACCTGGTAAGTGAATGCTCACAATTGGTTAATAGGACTTTAGATGAACGGTTGCAGTATGAGGCTACTATAGGACAACTTCATACAAACCTTTTAATGAAGAATCAAGAGATTGAATATCTTAATGAAAAGGTTGTTGAGTTTTCAGTGTCAGATGAAGTTGTTCGCTCTTATGCAAATTCAATTGAAGATTTTATGAAAGTTTCGTCGGAAAAGGAGAGAGATATGGAGGCCACATTAGACAGAGTGTTAGCATCTCTCATCTCAGCATTGAACCAGCAAGATCTTCTCGACGATTCTGTATCTGAAAAAACACTAACTGTTGAAAGAAGCACTTCTCTATTAATTGATAATTATAACAAAATCCTTCTGGAAATCAATCAAATCCAAAAATGTTTATCTGGGGCAGAGTCAGACATTGTGTTTACAGAATTTGGAACAATTTTGGCCTCTGCTCGTGATAAGTTAATTGAGATCAAAGCTAAAGAGGTAACCAATGTCGAAAAACTATATCATCTGGAAGATGAAAATAGAAAATTGGCAGACGAGCTAGACAATTACAGATTGACAGTTGAGACTGTTAATGCAGAACTTCAAAAGGCAAAGAGTGAGCTGGAGCAGGAAAGGATAAGGTGTGCTAATACCAAAGAGAAACTAACGATGGCTGTGACGAAAGGCAAGGCATTAGTACAGCAACGTGATGCATTAAAACAGTCTCTTGCTGAAAAAGATCGTGAGCTTGAAAAATATTCAGTCGAACTACAAGAGAAATCAAATGCCTTGGAGGCTGCCGAACTAATTAAGATTGACTTGGCTAAAAATGAAAATTTAGTTGCATCACTTCAGGAAAATTTGTTGCAAAGGAATATGGTCCTCGAAAGTTTTGAGGATATTATATCTCAACTTGAAGTTCCTCGTGAACTTAAGTCAATGGATAGTATGGAAAGACTCAAGTGGTTTGTGGATGAGAAGAAAGTCCTGGAGGCTATTTTGTTGGAGTTTCATAAATTAAAAGATACTCTAAACTTATCTGATTGGCCAGATTTAATTGCACCTTATGACCTGAAATCTTCTGTCAGTTGGCTTAAGGAATCATTTTTCCAGGCTAAAGATGAAATAATGATCTTGCGAGATGAACTTGCTAAAACAAAAGAAGCAGCACATGGAGAGATTGACAGCATAAGTGCATTACTTTTAATTAAATTACAGGAAAAGGATTACCTCCAGGAAGAGTTGGATGATCTATTGAGAAAACACAAAGAAGTCATGATAAAAGAGCATCAGACTTCGTTGGAGAAGGCTCAAATCATAAAAATGTTACAAGAAGAATCTGGAATGACAACAGATGATGGAGAAGACAGTGAATCTTCGTTGGACTTGAACTTGCTTGTTTACAGATGCTTTCAGAGAATAAAAGAGCAGGCTTGTGCTTCTGCTGAAACCACTGGTGAATATGTGGAATCCTTTGAAAAGGTTAAAACTCTTTTGTACGTCAGTAGTCAGGATTTGATGCTCCATGATATAATTCTAGAAGAGGAGTCTTCTAAGATGAGTAATTGCTCAACTAGGTTAAGATCAATATCCCATGAACTTGGAGAAGTGAAAGAGGAAAATGACTCTTTGCAAAGAGATCTTCAAAGATCCGAGGAGAAATATGCCATGCTAAGGGAAAAGTTGTCCTTGGCAGTTAAGAAAGGCAAAGGACTGGTTCAGGACAGGGAAAATATGAAAAATCTCTTAGATGATAAGAACGTAGAAATAGAGAAGTTGAAACTACAATTAGATAGTTTAGAATCCACAGTTGCTGATTGCAGAAATCAAATCAATTTGTTGTCTATTGATACACAGCGAATTCCAGAGTTGGAGTCTGATCTTGGTATCTTGAAGGATAAATGCAATCAATATGAGCAGTTCTTATTGGAGAGCAATAATATGTTACAGAAAGTAATTGAATCGATTGATGGAATTGTTCTTCCTATTAATATAGTTTTTGAAGAGCCTATAGCTAAGGTGAAGTGGATTGCTAAATACATTAGGGAAACATATGATGCTAAGATACGTACAGAACAAGAATTGGAGAATGTTAAAGAGGAATCAAGTACTATGGAAAGTAAATTAGGAGATGCTTTAGCTGCTATGAAATCATTGGAAGATGCATTATCATTTGCTGAGAACAACATTTTTCAACTTTCTGTGGAGAAAAGGGAAATAGAATCTAGTAAGTTGCGCATTGAACAGGAATTACAGAAAGCATTAGATGAAGCCTATTCCCAGTCCAGCAAGTGTGCTGAGGCTTCTTTATCTATGAGCCTACTTCAAGATTCGTTATCACTGGCAGAAAATAAAATATCTCTGCTTGTCAGAGAGAAAAAAGAAGCTGAAGTTTGTAAAGTCACTGCAGAGATGGAGTCTAAGAAAGTAAAGGAGGATGTGGCTGTTCAGACAGATAAATTGGCCGAGGCCCAGAGAATTATAAACACATTAGAAAAGACAATGGCTGAGCTTGAGAATAATGTTTCTTTGCTGACGGAACAGAATGCTGAAGCACAAAGTGCTATAGAGAAACTAGAGACAGAGCGAAAGCTATTGCAAGAAGAAGTCAGCTCTCAAGCGAGCAAAGTTGTTGAGGTGGTTGAAACAAGAAAATCTTTGGAAGATGCATTATTTAAGGCAGAAAGTAAAATTTCTACAATTGAAGTTGAGAGGAAAAAATCTGAAAATGAGATATTTGCTCTAAATTCCAAATTAAATGCATGCATGGAAGAGTTGTCCGGGACTAATGGCAGCTTACAGAGCAGATCTGTAGAGATTGTGGGCTACCTCAATCATCTTCATAAGTTTATTGCAGATGAGACATTGTTGACTGTGGTGACAGGATGCTTTGAGAAGAAACTTGAGAGTCTAAAAGAGATGGATATCATTCTGAAGAACACCAGGGATTGTTTTGTTAACAGCGGCATAATAGATTCTCATAATCACCGTGCTATTATGGATCCGTATGTTATGGAATCTCATTCTCATGGAAAGCTCCTCGATTTTTCTGTTGAAAGTGAAAGTAGTAAGGTGGTTGTTGAAGATGATGTTGATAATATTTCGTCATCTTTTAGAAAGATTATGGAAGGAATCTGGTTAAAGAACAAGATGTTCACAGATTATTTTGAAGGTTTCTCCTCTTCAATGGACGGGTTTATTGCTGATCTGTTAAAAAAAGTGGAAGCAACAAGGGAGGAAGTAATTTTTGTGTGTCGACAAGTCGAATCCTTGAAAGAGATGGTGAAGAATCTTGAAATGCATAAACAGGAACATGAAAATACCAAAGTGATGCTGGAAGATGATGTTTCACTTCTACTGTCGGCCTGTGTTGACACAACAAGAGAACTTCAGTTTGAAAGGAACAACCATCTACTTTTACTCAGTTCTATTCCCGAACTCAATGACTTGAAGGATACCATACCCATGGAAAGTTGTGAAACTAGTGGAGCTTCAGCTGCAGAGTCTCTAGGAAAATCTGCTAGTAAGAAATCAGCTGCCGCTGCAGAACAATTATTATCTGCTAGTAGAAAAGTTCGATCCATGCTTAAGCAGTTTGAGAGTACCAGTAAGGTTGCAGCTGCTAAGATTCAAGATATGCAGCATACGTTGGAAATAACTGAGGCAACTACTGAAAAAGTTAGAGAGGAAAAGGACTTCAACCAAAATATGGTAGTTAAGTTGGAGACTGATTTACAACTATTACAGAGTTCCTGTGTTGAACTGAGGCGTCAACTGGAGGCTTGTCAAGCAAATGAAGCAATTTTAAAAGAAAAGGAGGCTGAAGTTTCATCTTTGTATAATGGTTTGTTGGTGAAAGAACAAGAGGCAGAAGACTGCGTTTTGTCAGCAATGCAAATGAAAGCCCTCTTTGAGAAAGTTAGAAGGATTGAGATCTCTTTACCAGAATCAGAATACCTAGATCTGGAACAATATGATTCACCTGATGTAAAGAAGCTATTTTACCTAACTGATTATGTTTCTGAGTTACAGAATCAGCTAAACTTATTATCTCATGACAAGCAAAAGCTGCAGTTTACGGTGACTACACAAACACTTGCAATTGAACAACTGAAAGAGGAGGTTGATAGAGCATCGAGGGATCAACTTGATTTAGAGGAGATGAAGAAAGATCTCTCAGAGCTTTCTTATTCTCTGGAACAAATTACTAGTTTGTTGGGTAGTAAATTCAGTGGAGATTCAGAGTCGGATGGCTTGAAGGGACTAGTAAGTATATTAGAAAGGCAGGTCCGGGATATGCTCTCAGAATCTGAAAATTCGAAAATCAAATTTGAGGAACTGAGTAAGAAGTTAATAGGGAGCCAAAAGGTCGTGGATGAACTAACTACCAAGAATAAGCTACTTGAAGAGTCACTTCAAGGCCGGATGTCTCAACCAGAGATAATCAAAGAAAGGAGCATCTTTGAAGCACCTTCTCTTCCTTCTGGATCAGAGATATCAGAGATTGAAGATGCGGGACCAGTTGGAAAAAGTGCAATGCCACCTGTTCCATCAACCTCAGCTGGCCGTGCTCGAACTTTGCGAAAAGGTTCAACTGATCATCTTGCAATCGACGTAGAAACGGAATCTGATCGTTTAATAGGAAATGGCGTGGAAATTGATGAAGACAAAGGTCACGTGTTCAAATCACTCAATACATCGGGTCTTATCCCAAGACACGGAAAACTTATTGCAGATCGAATCGATGGAGTTTGGGTTTCTGGCGGTCGAATTTTGATGAGTCGTCCAGGGGCAAGGCTCGGCCTCATTACCTACTGGTTCTTGATACACATATGGTTACTGGGAACCATTTTGTGA 5550 38.9 MSENHDPEQALQSSGSGAEDGDKGVETVLNVDVMESSSETAVDTVSENDSVLQSSEVSSGFVPSEPNQGSTMSPVAPLAEGAENSGQDDPDETVVVEDAGKEDMFVDCPDELVGNADIREAAAAVETEGSLTEEKPSDMQELQYEVENVSLMNEVENTRATLDKTIFEKENAIHEFEEEREAFVKELLRICHQLKTATNQQSLFNVTGSQLNESLHLQEVEHVENTMVTNITLKDLVSECSQLVNRTLDERLQYEATIGQLHTNLLMKNQEIEYLNEKVVEFSVSDEVVRSYANSIEDFMKVSSEKERDMEATLDRVLASLISALNQQDLLDDSVSEKTLTVERSTSLLIDNYNKILLEINQIQKCLSGAESDIVFTEFGTILASARDKLIEIKAKEVTNVEKLYHLEDENRKLADELDNYRLTVETVNAELQKAKSELEQERIRCANTKEKLTMAVTKGKALVQQRDALKQSLAEKDRELEKYSVELQEKSNALEAAELIKIDLAKNENLVASLQENLLQRNMVLESFEDIISQLEVPRELKSMDSMERLKWFVDEKKVLEAILLEFHKLKDTLNLSDWPDLIAPYDLKSSVSWLKESFFQAKDEIMILRDELAKTKEAAHGEIDSISALLLIKLQEKDYLQEELDDLLRKHKEVMIKEHQTSLEKAQIIKMLQEESGMTTDDGEDSESSLDLNLLVYRCFQRIKEQACASAETTGEYVESFEKVKTLLYVSSQDLMLHDIILEEESSKMSNCSTRLRSISHELGEVKEENDSLQRDLQRSEEKYAMLREKLSLAVKKGKGLVQDRENMKNLLDDKNVEIEKLKLQLDSLESTVADCRNQINLLSIDTQRIPELESDLGILKDKCNQYEQFLLESNNMLQKVIESIDGIVLPINIVFEEPIAKVKWIAKYIRETYDAKIRTEQELENVKEESSTMESKLGDALAAMKSLEDALSFAENNIFQLSVEKREIESSKLRIEQELQKALDEAYSQSSKCAEASLSMSLLQDSLSLAENKISLLVREKKEAEVCKVTAEMESKKVKEDVAVQTDKLAEAQRIINTLEKTMAELENNVSLLTEQNAEAQSAIEKLETERKLLQEEVSSQASKVVEVVETRKSLEDALFKAESKISTIEVERKKSENEIFALNSKLNACMEELSGTNGSLQSRSVEIVGYLNHLHKFIADETLLTVVTGCFEKKLESLKEMDIILKNTRDCFVNSGIIDSHNHRAIMDPYVMESHSHGKLLDFSVESESSKVVVEDDVDNISSSFRKIMEGIWLKNKMFTDYFEGFSSSMDGFIADLLKKVEATREEVIFVCRQVESLKEMVKNLEMHKQEHENTKVMLEDDVSLLLSACVDTTRELQFERNNHLLLLSSIPELNDLKDTIPMESCETSGASAAESLGKSASKKSAAAAEQLLSASRKVRSMLKQFESTSKVAAAKIQDMQHTLEITEATTEKVREEKDFNQNMVVKLETDLQLLQSSCVELRRQLEACQANEAILKEKEAEVSSLYNGLLVKEQEAEDCVLSAMQMKALFEKVRRIEISLPESEYLDLEQYDSPDVKKLFYLTDYVSELQNQLNLLSHDKQKLQFTVTTQTLAIEQLKEEVDRASRDQLDLEEMKKDLSELSYSLEQITSLLGSKFSGDSESDGLKGLVSILERQVRDMLSESENSKIKFEELSKKLIGSQKVVDELTTKNKLLEESLQGRMSQPEIIKERSIFEAPSLPSGSEISEIEDAGPVGKSAMPPVPSTSAGRARTLRKGSTDHLAIDVETESDRLIGNGVEIDEDKGHVFKSLNTSGLIPRHGKLIADRIDGVWVSGGRILMSRPGARLGLITYWFLIHIWLLGTIL 1849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 700668 707566 + Lag0039896.1 Lac13g0100 591256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0100 1849 Coils Coil 1115 1142 - -
Lac13g0100 1849 Coils Coil 1571 1619 - -
Lac13g0100 1849 MobiDBLite consensus disorder prediction 1 16 - -
Lac13g0100 1849 Coils Coil 1469 1503 - -
Lac13g0100 1849 Coils Coil 1045 1107 - -
Lac13g0100 1849 MobiDBLite consensus disorder prediction 1723 1758 - -
Lac13g0100 1849 Coils Coil 1319 1346 - -
Lac13g0100 1849 Coils Coil 467 501 - -
Lac13g0100 1849 Coils Coil 639 659 - -
Lac13g0100 1849 Coils Coil 758 799 - -
Lac13g0100 1849 Coils Coil 912 988 - -
Lac13g0100 1849 PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 158 74 1003 - -
Lac13g0100 1849 SUPERFAMILY Tropomyosin 915 1158 - -
Lac13g0100 1849 Coils Coil 807 848 - -
Lac13g0100 1849 MobiDBLite consensus disorder prediction 1 92 - -
Lac13g0100 1849 MobiDBLite consensus disorder prediction 31 74 - -
Lac13g0100 1849 Coils Coil 404 452 - -
Lac13g0100 1849 Coils Coil 1441 1461 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0100 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0100 Lac-Chr13:700668 Lac8g1322 Lac-Chr8:29013296 1.10E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1114 . . . . . . . . Cmo04g01902 Cmo18g00713 . Cma18g00726 . Car18g00674 Sed06g1718 Cpe09g00563 Cpe01g01587 Bhi07g01850 Tan04g0116 Cmetu10g1236 Lac13g0100 Hepe10g1555 . . Cla05g02625 Cam05g2815 Cec05g2851 Cco05g2882 Clacu05g2819 Cmu05g2667 Cre05g2783 . . Cone8ag0714 . Lsi04g00640 . . . . Blo11g00999 . . . . . . . . . Cma04g01803 . Car04g01816 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004326 1 1 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 5 1 42