Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0111 ATGGATGCCACGACAAGCGAAACGACGGCTATACAATTCCATAGCATTCCTGACCAGTCAGTTTCTGGTATTGTCACCAGTCCAGCGTCGACATTTCCTCTACCGAAACGACATTGCTTTGGAGAATCCGACCCGGGCGAATTCCCCTTAGCTGCCAATCCCTCCATTGTTCTTCATGTCCTGACAGCGTGTAACTTGGATGCTCAAGACCTTGCAAAGTTAGAGGCAAGATCTTTTGCGACGTGTTCGTTCTTTAGACAGCCTGCGAACTTCGCTCCTGACTATGAATTATCGATTGCGGAACTTGCTGCTTTGGATATGTGCCAAAAGAGAGCCATATTCAAACCTATGACAACAGAACAGCATCAAGCATTGAAGCAAAGATGTGGTGGTTCCTGGAAACTGGTATTGAGGTTTTTACTGGCTGGAGAAGCATGTTGCAGAAGGGAGAAATTCCTGGCAATAGCAGGACCCGGTCACAGCATCGCAGTCACGTCGAAAGGAGCTGTTTACTCCTTTGGGTCCAACAACTCAGGACAGCTTGGACATGGTAACGCCGAAGAAGAATCACGGCCTCGCCTAATCAGATCCCTGCAAGGAATTCGAATAATTCAGGCAGCAGCAGGGGCCGGGAGGACGATGTTAATCAGCGATGCCGGGCATGTTTATGCATTTGGCAAGGATTCATTTGGTGAAGCTGAGTATGGAGCTCAAGGAGCTCAAGTCGTTACTACACCGAAGTTGGTCGAATCCCTCAAGGATATATTTGTGGTGCAAGCTGCAATTGGAAATTTCTTCACTGCTGTACTATCAAGAGAAGGTAGAGTGTATACATTTTCTTGGGGAAGCGATGGTAGGCTCGGTCATCAGACCGAACCAAACGACTTGGAACCACGGCCCCTGATGGGGGCGTTAGAAAACATTCCTGTTGTTCAAATTGCTGCTGGATATTGCTACCTTCTTGCTCTAGCTTGTCATCCTAATGGCATGTCAGTATACTCTGTTGGGTGTGGACTCGGCGGGAAGCTTGGTCATGGTTCAAGGACTGATGAGAAACACCCGCGACTCGTTGAACAATTTCAGCTTCTGAATCTTCAGCCAATCGTGGTCGCTGCTGGTGCTTGGCACGCAGCTGTTGTAGGTCGCGACGGTCGAGTTTGTACATGGGGTTGGGGCCGATATGGGTGCCTGGGTCATGGAAATGAGGAATGTGAATCTTCACCTAAGGTAGTCGAAGCATTAAGCAACGTTAAAGCAGTTCATGTTGCTACAGGAGATTATACAACATTTGTAGTATCTGATGATGGCGACGTGTATTCTTTCGGTTGTGGAGAATCTGCTAGTCTGGGCCATAATAATGGCATCGCCGATGGAGAGAGGAATCGGCACCCGCATGTTTTAAGCCCAGAACTAGTAAGTTCTCTGAAGCAAATTAACGAGCGGGTAGTTCAGATTAGCCTCACTAATTCAATTTACTGGAATGCACACACCTTTGCCCTGACCGAGTCAGGGAAGTTGTATGCATTTGGTGCTGGAGACAAAGGGCAGCTCGGGGTCGAACTTCTGGCGAATCAAACCGAAAGGGCGAATCCAGAGCGAGTTGACATTGATCTAAATTAA 1620 48.09 MDATTSETTAIQFHSIPDQSVSGIVTSPASTFPLPKRHCFGESDPGEFPLAANPSIVLHVLTACNLDAQDLAKLEARSFATCSFFRQPANFAPDYELSIAELAALDMCQKRAIFKPMTTEQHQALKQRCGGSWKLVLRFLLAGEACCRREKFLAIAGPGHSIAVTSKGAVYSFGSNNSGQLGHGNAEEESRPRLIRSLQGIRIIQAAAGAGRTMLISDAGHVYAFGKDSFGEAEYGAQGAQVVTTPKLVESLKDIFVVQAAIGNFFTAVLSREGRVYTFSWGSDGRLGHQTEPNDLEPRPLMGALENIPVVQIAAGYCYLLALACHPNGMSVYSVGCGLGGKLGHGSRTDEKHPRLVEQFQLLNLQPIVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECESSPKVVEALSNVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNNGIADGERNRHPHVLSPELVSSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGVELLANQTERANPERVDIDLN 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 764715 766954 + Lag0039907.1 Lac13g0111 591267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0111 539 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 383 IPR000408 -
Lac13g0111 539 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 168 219 IPR000408 -
Lac13g0111 539 Pfam Regulator of chromosome condensation (RCC1) repeat 435 486 IPR000408 -
Lac13g0111 539 Pfam Regulator of chromosome condensation (RCC1) repeat 383 432 IPR000408 -
Lac13g0111 539 Pfam Regulator of chromosome condensation (RCC1) repeat 167 216 IPR000408 -
Lac13g0111 539 Pfam Regulator of chromosome condensation (RCC1) repeat 273 322 IPR000408 -
Lac13g0111 539 Pfam Regulator of chromosome condensation (RCC1) repeat 220 270 IPR000408 -
Lac13g0111 539 Pfam Regulator of chromosome condensation (RCC1) repeat 331 380 IPR000408 -
Lac13g0111 539 PRINTS Chromosome condensation regulator RCC1 signature 170 186 IPR000408 -
Lac13g0111 539 PRINTS Chromosome condensation regulator RCC1 signature 276 290 IPR000408 -
Lac13g0111 539 PRINTS Chromosome condensation regulator RCC1 signature 220 236 IPR000408 -
Lac13g0111 539 PRINTS Chromosome condensation regulator RCC1 signature 260 276 IPR000408 -
Lac13g0111 539 PRINTS Chromosome condensation regulator RCC1 signature 373 391 IPR000408 -
Lac13g0111 539 PRINTS Chromosome condensation regulator RCC1 signature 431 452 IPR000408 -
Lac13g0111 539 Gene3D - 153 325 IPR009091 -
Lac13g0111 539 Gene3D - 326 538 IPR009091 -
Lac13g0111 539 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 274 326 IPR000408 -
Lac13g0111 539 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 156 230 IPR051210 -
Lac13g0111 539 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 539 IPR000408 -
Lac13g0111 539 SUPERFAMILY RCC1/BLIP-II 155 453 IPR009091 -
Lac13g0111 539 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 435 IPR000408 -
Lac13g0111 539 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 220 273 IPR000408 -
Lac13g0111 539 Pfam Regulator of chromosome condensation (RCC1) repeat 495 516 - -
Lac13g0111 539 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 436 503 IPR000408 -
Lac13g0111 539 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 370 380 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0111 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0111 Lac-Chr13:764715 Lac2g1796 Lac-Chr2:17361156 3.90E-19 dispersed
Lac13g0110 Lac-Chr13:750901 Lac13g0111 Lac-Chr13:764715 1.10E-140 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44