Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0113 ATGATAAGAATAGGATCTCAAGGAGATGAGGAGTGGATCTCTTTAAAGTTTGAAAAATTACCCGATTACTGCTATGGTTGCGGAAGAATGGGGCATCTAGCGAGGGATTGTGTTGATACGGAGGCGATGAACCAAAACAAACCACGCTATGGCCCTGGGCTACGAATGGAATTTATGCACAAAGGGAAACCGAAGATCAATATGGAAAACAAGAAACCAGAATTGCAAAACAGAGGTAAGGAAAGCAAGGCTACCGGAAAGTTGACAGAAAATAGAGAAGAAAATATAAGTTTCAGGCCGGAAAGCTGGCCGGAAAAGTCACCGGGAAAAAAGGAAGAAGACGGTACGGCTAGAAAGGACAGCAGGACAGACACAACGGATAGTTCTGGGTATCCTGGAAAGGCTGACACGAACATGACAGATCAAAAGCAAATCAGCTCAAATCCCAAAGAAAAAGACAAAGAGAAAGGAAAGGCTCATGAGGCAGAATTATGCACGTTACCTTCCAACATTCCCCAAAAGATGTCATCAGAGGAAGAAACATCCTTGGAAGCAAAAGCAATTTTAGAGGGGGTTAAGATGATCGAGTATACATGCTTTCGTCAAAGAATCCCCCTCGAAATTGAATCGGATGCGCTCGAAATCATCAGAGCGCTGAAGGGAGAATCTGAAGATATCTCTGAGTCGAAGGTCATCTTAGATGAAATCATCAGTCTCGTTTCGCGGCTGGTCTCGGTGGATTTCCGCCATTGTCGAAGGTCTTCGAACACAGTAGCCCACTGTGTAGCGAGAAACGCTTGTAATCTTCATTTCCGTTTTGGCCAGGAGGCTCCCCTCTCGCGGGAAAATGTGTTTCATTTTGTAGCCTCTGGCATCGTGGTGAACCCGACGTTTTGTATTCCCTCTGGTTCTCTGAGGGAGACAATTGTCCCTCTTCCTTCCTTCTTCTTTCTTCCATCCACCTTGTTCGAGTCTGCTCGGGAGGGGTGGATCGTGGCACAGGATCGAGAGGGAGTATCTCCACTCCTCCACTCCACTCGTCTTCTTCTGTATGTCATTTCTGATTCCTTTCGCTTCCCCAGGCCCTTCCTGCTCCGATCGGGTCCTACATTCCTTTCTCCCCTCTCTGGGATCGGGCCCGGACTGTTCCTTTCGCTTCTTTGCTTCTTATGTCTTCCTGATCCATGTTCTTTGTTGGGTCTTCTCTCGTTTCGCCTTTGCTGTTGTCTTGAGATGAATCCTCTCTGCTGCATTGCTCCGGTTTCCATTGATCGGGACCGGGCTAATCCGGTTGTTGCCAAATCCCCCACTCACTGTCAGTTAGGGCTCGATGCTCCTATTAAGACCTTGAGCTATGGCTCTAAACCGACCTTTTCCGCTCAGGTTTCGTCGGTTGGGACTGAATCGGAGAAGGTTTCTCTCTCTGTAGAAGGGGAAGACTCGGTTACTGAAGCTCGGGAGTCTAAGGGGCTTGCCGGGAATGGCGGAGTCAGTGGAACTGTTGCTGGGATTTTGTACAAGTGGGTGAACTATGGGAGAGGTTGGAGAGCGAGGTGGTTCGTGCTGGAAGATGGGGTGCTTTCGTACTACAAGATTCATGGTCCTGATAAGATTTTGATGAGCCCTGCTAGAGAGAAGGATGTTAGGGTGATCGGAGAGGATTCTTTGAGGTACATGAGGAAGGCTAATTGGGGAACCACTCGACTCGGACTGTTGAAGAAGCAATGCAAACCTTTTGGGGAAGTTCATTTGAAGGTTTCTTCAGTTCGTGCTAGTAAATCAGATGATAAAAGGCTTTCCATCTTCACTGGAACAAAAACTCTTCACTTGAGATGTATATCCAAGGAAAACAGAGCTTCCTGGATCGATGCTTTGTTGTCTGCCAAAGATCTTTTCCCTAGAATGTTATGCAGCAACGATTTTCTTCCATCGCAGGAGGTGGTTGTTTCGACAGAGAAGCTTCGCTCACGACTCTCACAAGAAGGGATTGATGAGACAGTCATCAATGACTGTGAATCAATTATGCTCTCTGAACTCTCTGAGATGCAAAACCAGTTGAAAGCTCTCCAATACAAGCATGTTGCTCTGTTAGATACATTGAGGCGATTGGAGACAGAGAAAATAGAACTGGAAACTACTGTTGTGGATGAAACCAAGGAACGGGAATCTTGCTGTGGACAAGGGAATAGACGATTCAGTGATTTCTATTCTGTTATGTCGGAGGGAAGTGCATCTGATTTTGATGGAGAAAATGAGAGTCAAGATGGAGGTGACGTTGAAACAGATGAAGATGATGGAATGTATTTCGATACCAATGATTTTTTGTCTGCAGAAGCTTTGAGAAGTGCTTCCTATCGCAGTAGGGAGTCCTCAGGAATTGTTTGTGCATATGATAATGGTTCCTACTCCTCTGACCATCTGCGTGAAGCCGAAAATCAGATAAGGATGGTGAAATATCCATATGTCAAAAGAAGGGACAGCCTTCCAGACCCAAAGGAGAAAGAGAAGCCTGTTGGCTTATGGTCAATTATCAAAGATAATATTGGAAAGGACTTATCTGGAGTATGTCTACCTGTTTACTTTAATGAGCCACTGTCTTCGTTGCAAAAGTGTTTTGAGGATTTGGAATATTCTCACTTGGTCGATCAAGCGTTTGAATGGGGAAAGCAGGGGAATGACTTGATGAGAATTCTAAAGATTGCTGCTTTTGCCGTTTCTGGCTATGCTTCAACAGAAGGTCGGCAATGTAAACCATTTAACCCCTTACTTGGAGAAACCTACGAAGCTGACTATCCAGACAAAGGACTTCGTTTTTTCTCAGAAAAAGTAAGTCACCATCCAATGGTTGTTGCTTGCCATTGTGAGGGAAGAGGCTGGAAGTTTTGGGCAGACTCCAATCTCAAGGGTAAGTTTTGGGGGAGATCCATTCAGCTCGATCCCGTGGGGGTCCTTACCTTGCAGTTTGAGGATGGGGAGACGTTCCAGTGGAGCAAGGTCACTACTTCCATTTACAATATCATACTAGGAAAAATTTACTGTGATCACTATGGCACCATGCGAATCAAAGGCAGTGGCAAGTACTCCTGCAAGCTCAAGTTCAAGGAACAGTCTATCATAGATCGGAATCCACATCAGGTCCATGGATTTGTGCAAGACAATAGAACTGGAGAGAAGGTAGCACTGTTGGTGGGAAAGTGGGACGAGGCGATGTACTATGTGTTGGGAGACCCAACCACAAAGCCCAAGGGGTATGATCCAATGACAGAAGCTGTGTTGCTCTGGGAAAGAGACAGATCTGAAGCTAAAACAAGATATAATCTCTCTCCTTTTGCAATATCCTTGAATGAACTTACACCTGGCTTGATGGAGACATTGCCTCCAACTGACTCAAGGCTTAGGCCAGATCAAAGACATCTGGAAAATGGAGAATATGAGTTGGCAAATGCAGAGAAGTTAAGACTTGAACAGTTGCAGAGACAGGCTCGGAAGTTGCAGGAGAGAGGATGGCAACCGAGATGGTTTCAGAAAGACGAAGATGGTTGTTACCGTTATTTGGGTGGTTATTGGGAAGCTAGGGACAAAAAGAATTGGGAAGGAATTCCTGATATATTTGGCCAACCAACAGAGTTGGTCCCTTGTTCAGGAGAAGAGTAA 3654 45.59 MIRIGSQGDEEWISLKFEKLPDYCYGCGRMGHLARDCVDTEAMNQNKPRYGPGLRMEFMHKGKPKINMENKKPELQNRGKESKATGKLTENREENISFRPESWPEKSPGKKEEDGTARKDSRTDTTDSSGYPGKADTNMTDQKQISSNPKEKDKEKGKAHEAELCTLPSNIPQKMSSEEETSLEAKAILEGVKMIEYTCFRQRIPLEIESDALEIIRALKGESEDISESKVILDEIISLVSRLVSVDFRHCRRSSNTVAHCVARNACNLHFRFGQEAPLSRENVFHFVASGIVVNPTFCIPSGSLRETIVPLPSFFFLPSTLFESAREGWIVAQDREGVSPLLHSTRLLLYVISDSFRFPRPFLLRSGPTFLSPLSGIGPGLFLSLLCFLCLPDPCSLLGLLSFRLCCCLEMNPLCCIAPVSIDRDRANPVVAKSPTHCQLGLDAPIKTLSYGSKPTFSAQVSSVGTESEKVSLSVEGEDSVTEARESKGLAGNGGVSGTVAGILYKWVNYGRGWRARWFVLEDGVLSYYKIHGPDKILMSPAREKDVRVIGEDSLRYMRKANWGTTRLGLLKKQCKPFGEVHLKVSSVRASKSDDKRLSIFTGTKTLHLRCISKENRASWIDALLSAKDLFPRMLCSNDFLPSQEVVVSTEKLRSRLSQEGIDETVINDCESIMLSELSEMQNQLKALQYKHVALLDTLRRLETEKIELETTVVDETKERESCCGQGNRRFSDFYSVMSEGSASDFDGENESQDGGDVETDEDDGMYFDTNDFLSAEALRSASYRSRESSGIVCAYDNGSYSSDHLREAENQIRMVKYPYVKRRDSLPDPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSHLVDQAFEWGKQGNDLMRILKIAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMVVACHCEGRGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFEDGETFQWSKVTTSIYNIILGKIYCDHYGTMRIKGSGKYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVALLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERDRSEAKTRYNLSPFAISLNELTPGLMETLPPTDSRLRPDQRHLENGEYELANAEKLRLEQLQRQARKLQERGWQPRWFQKDEDGCYRYLGGYWEARDKKNWEGIPDIFGQPTELVPCSGEE 1217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 777712 788489 + Lag0039909.1 Lac13g0113 591269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0113 1217 Gene3D - 925 1091 - -
Lac13g0113 1217 Gene3D - 163 270 IPR036397 GO:0003676(InterPro)
Lac13g0113 1217 Gene3D - 1136 1198 - -
Lac13g0113 1217 ProSiteProfiles PH domain profile. 498 630 IPR001849 -
Lac13g0113 1217 MobiDBLite consensus disorder prediction 743 763 - -
Lac13g0113 1217 Coils Coil 686 720 - -
Lac13g0113 1217 Pfam Reverse transcriptase-like 180 266 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lac13g0113 1217 FunFam oxysterol-binding protein-related protein 1D isoform X1 925 1098 - -
Lac13g0113 1217 Coils Coil 1147 1167 - -
Lac13g0113 1217 CDD RNase_H_like 184 264 IPR044730 -
Lac13g0113 1217 MobiDBLite consensus disorder prediction 64 164 - -
Lac13g0113 1217 MobiDBLite consensus disorder prediction 64 125 - -
Lac13g0113 1217 CDD PH_ORP_plant 501 637 - -
Lac13g0113 1217 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 498 1179 IPR000648 GO:0005829(PANTHER)|GO:0008289(InterPro)|GO:0015248(PANTHER)|GO:0016020(PANTHER)|GO:0032934(PANTHER)|GO:0043231(PANTHER)
Lac13g0113 1217 SUPERFAMILY Oxysterol-binding protein-like 834 1206 IPR037239 -
Lac13g0113 1217 ProSiteProfiles Zinc finger CCHC-type profile. 24 37 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac13g0113 1217 SUPERFAMILY PH domain-like 501 634 - -
Lac13g0113 1217 MobiDBLite consensus disorder prediction 126 145 - -
Lac13g0113 1217 SUPERFAMILY Retrovirus zinc finger-like domains 21 40 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac13g0113 1217 MobiDBLite consensus disorder prediction 146 162 - -
Lac13g0113 1217 Pfam Oxysterol-binding protein 840 1192 IPR000648 GO:0008289(InterPro)
Lac13g0113 1217 Gene3D - 498 632 IPR011993 -
Lac13g0113 1217 Pfam Pleckstrin homology domain 506 625 - -
Lac13g0113 1217 SMART PH_update 499 632 IPR001849 -
Lac13g0113 1217 FunFam Oxysterol-binding protein-related protein 2A 1136 1206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0113 K20456 - - csv:101204827 1574.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2197 Lac-Chr11:38104141 Lac13g0113 Lac-Chr13:777712 2.00E-13 dispersed
Lac13g0113 Lac-Chr13:777712 Lac5g0448 Lac-Chr5:4974555 1.70E-224 dispersed
Lac1g2648 Lac-Chr1:47803043 Lac13g0113 Lac-Chr13:777712 8.30E-07 dispersed
Lac8g2721 Lac-Chr8:44653897 Lac13g0113 Lac-Chr13:777712 4.90E-17 dispersed
Lac1g1795 Lac-Chr1:39526055 Lac13g0113 Lac-Chr13:777712 3.50E-78 transposed
Lac6g2630 Lac-Chr6:44083856 Lac13g0113 Lac-Chr13:777712 1.30E-44 transposed
Lac8g1887 Lac-Chr8:37118597 Lac13g0113 Lac-Chr13:777712 5.00E-260 transposed
Lac11g0559 Lac-Chr11:5705533 Lac13g0113 Lac-Chr13:777712 3.10E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g595 . . . . . . . Bma15g00230 . . . . . . Sed01g3038 . Cpe01g01580 Bhi07g01839 Tan04g0129 Cmetu09g0131 Lac13g0113 Hepe10g1564 . . Cla05g02620 Cam05g2807 Cec05g2843 Cco05g2875 Clacu05g2811 Cmu05g2659 Cre05g2775 Cone13ag1096 Cone19ag1086 . . Lsi04g00633 Csa05g02254 Chy10g00824 Cme10g00607 Blo06g00836 . . . . . . . . . . Cma04g01792 . Car04g01807 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010393 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32