Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0115 ATGGCGGAGACCGGCGGCTACGGCCGTTTTCCGGGGAGTTTGGACCCGAGAGCGCAAGAGTTCCGGCCAAGGTATTCGACCACTCTGTTCATGCCGCAGCCCCACCATGTCTTCTTTCCGTACTCCTCTCCGTATCCTCCAATCAGCGACGTTCCTCTCCTGCCGTTCTGCGAGGGGGGTGTAGGCTACGCGCCGTTTCCGGCGCCGGCGCCGGCGTACGTTTCGGTGAGGTCTCCGGGGCAGGCGGTTTCGTCGGTTGCGACTCGGTCGCTGGTGGTGAGTTCGGTGCCTTGCGACGTAAGCGAGACGATGGTGCGACGGGAATTGGAAGCGTTTGGGGACGTGAGAGGAGTGCAGATGGAGAGGGTCCATGAAGGGATTGTGATCGTCCATTTCTATGACATTCGGCACTCCGAGAGAGCTCTGCGAGAGATTCGGGATCAGCACATGCAGCACCAGTGCCGTCTTCGTAACTACTTCAACAACAACAGCAACAATAACCGTTTCTCGTTTTCGAATTCCGGTGCTCAATTCCACGATTTCCCTCTTCCCCGTCCTTCTCCGGCGCCGGGACTCATCGCCGGCCACGCTGTGTGGGCCCAGTTCGTCGTTCCGGCGAGTAACGCCGTTCCGGCTGGGAAGAACCAGGGTACCATCGTCGTCTTCAATTTGGAGTCCACCGTTTCCACTTCTTGTCTCAGAGAAATCTTCGAGGCTTTTGGTCCTGTGAAGGAGTTGAGAGAGACGCCATTGAAGAAGCAGCAAAGGTTCGTTGAATTTTTCGACATCAGGGACGCGGGTAAGGCTTTGAAAGAGATGAACGGAAAAGAAATCAACGGAAAATCAGTTGTGATTGAGTTCAGTCGGCCGGGCGGCCATGGCAACAAGTTCTTCAATGCCAACTTAACCACTCCGGCCATCTGCGGCTCGAATAATCTATACCCGAGGAGTCTCAAATGCCCACCGCCGCGGCCTCCGCCGCCACCGCTGCCTCCTCCAACGCCGCCGAAGAATTTCTCTGGTGGGGCAGCTTCAAACGTTCCGTCGCGGTGGTATTATTCGAAACCCCATAGTTTCTCCAGGAAATTGAATCCCAGTAAGGGGAGTCGAAGCCCTAGTAGTAATCCCAGGAAGAGCTTGGATTCTAACGATGTGAATGGAAAAATGGCTTCCCTCGATTTGGAAGGCGCTGCGTGTAATGAAATTGAAGAGAGAGAATCGTGTGGAGCTCTGAGAAAGAACTCGAAGACCAGCCACAGTAGCCCCGCCGTTGCTGCTGACCAACAGCAGCAGCAGCAACATCAACAACAACTGCAGCCCAGTAGGAGTAAGCTAAGAAAATGTAGACAGTCCAAGAAATTCGATTCTCGATTCCTGATCAACGATAACAACACGGCGGATTCCGATTGCAGAACCACTGTGATGATCAAGAACATCCCAAACAAGTACAGTCAGAAGTTGTTGTTGAACATGCTGGACAATCACTGCATTCACTGCAACGAGCAGATGGGCGACGGCCATAACCAGCCACTTTCTTCCTACGATTTTGTATATCTCCCTATTGATTTCAACAACAAGTGCAACGTTGGATATGGGTTTGTGAACATGACCTCGCCGGAGGCCACATGGAGGCTGTACAAGGCGTTTCATCTTCAACCTTGGGAGGTTTTCAACTCCAGAAAAATCTGTGAAGTCACCTATGCTAGAGTACAGGGACTGGAAGCACTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGACCACTACCTGCCAGTGGTGTTTTCTCCGCCTCGGGACGGGAGGCAACTGACGGAGCCACTGCCCATTGGCGGCCAGAAACAGCCCATCTCCATTGGCCTTTCAACTACTCCTTCTGGTAATGATGAGATCGACGGTGAAGACGACTTCGACGGGGCTGCAACTGCGACAACAGTCGTTGACCAACAGGAGGAAGCCATGAATGGAAGCAGCAGCAACAGCAGCAGTGGCGTTGAAGAAGAATACGACGGTGATCAGTATCAAGTTTCCTAA 2040 53.09 MAETGGYGRFPGSLDPRAQEFRPRYSTTLFMPQPHHVFFPYSSPYPPISDVPLLPFCEGGVGYAPFPAPAPAYVSVRSPGQAVSSVATRSLVVSSVPCDVSETMVRRELEAFGDVRGVQMERVHEGIVIVHFYDIRHSERALREIRDQHMQHQCRLRNYFNNNSNNNRFSFSNSGAQFHDFPLPRPSPAPGLIAGHAVWAQFVVPASNAVPAGKNQGTIVVFNLESTVSTSCLREIFEAFGPVKELRETPLKKQQRFVEFFDIRDAGKALKEMNGKEINGKSVVIEFSRPGGHGNKFFNANLTTPAICGSNNLYPRSLKCPPPRPPPPPLPPPTPPKNFSGGAASNVPSRWYYSKPHSFSRKLNPSKGSRSPSSNPRKSLDSNDVNGKMASLDLEGAACNEIEERESCGALRKNSKTSHSSPAVAADQQQQQQHQQQLQPSRSKLRKCRQSKKFDSRFLINDNNTADSDCRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQMGDGHNQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATWRLYKAFHLQPWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMDHYLPVVFSPPRDGRQLTEPLPIGGQKQPISIGLSTTPSGNDEIDGEDDFDGAATATTVVDQQEEAMNGSSSNSSSGVEEEYDGDQYQVS 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 799248 801913 + Lag0039911.1 Lac13g0115 591271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0115 679 CDD RRM3_EAR1_like 471 572 IPR034458 -
Lac13g0115 679 MobiDBLite consensus disorder prediction 413 444 - -
Lac13g0115 679 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 290 IPR000504 GO:0003723(InterPro)
Lac13g0115 679 Gene3D - 414 578 IPR012677 -
Lac13g0115 679 SMART rrm1_1 90 157 IPR000504 GO:0003723(InterPro)
Lac13g0115 679 SMART rrm1_1 218 286 IPR000504 GO:0003723(InterPro)
Lac13g0115 679 MobiDBLite consensus disorder prediction 603 679 - -
Lac13g0115 679 MobiDBLite consensus disorder prediction 339 386 - -
Lac13g0115 679 MobiDBLite consensus disorder prediction 318 338 - -
Lac13g0115 679 MobiDBLite consensus disorder prediction 410 447 - -
Lac13g0115 679 Pfam RNA recognition motif 219 283 IPR000504 GO:0003723(InterPro)
Lac13g0115 679 Gene3D - 84 161 IPR012677 -
Lac13g0115 679 SUPERFAMILY RNA-binding domain, RBD 78 152 IPR035979 GO:0003676(InterPro)
Lac13g0115 679 MobiDBLite consensus disorder prediction 318 387 - -
Lac13g0115 679 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 174 IPR000504 GO:0003723(InterPro)
Lac13g0115 679 MobiDBLite consensus disorder prediction 645 679 - -
Lac13g0115 679 Gene3D - 212 296 IPR012677 -
Lac13g0115 679 SUPERFAMILY RNA-binding domain, RBD 217 550 IPR035979 GO:0003676(InterPro)
Lac13g0115 679 Pfam RNA recognition motif 2 471 581 IPR007201 -
Lac13g0115 679 PANTHER RNA RECOGNITION MOTIF-CONTAINING 466 651 - -
Lac13g0115 679 FunFam Terminal EAR1-like 1 421 577 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0115 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0115 Lac-Chr13:799248 Lac1g3483 Lac-Chr1:54123602 6.70E-32 dispersed
Lac4g2107 Lac-Chr4:40704293 Lac13g0115 Lac-Chr13:799248 3.40E-13 transposed
Lac13g0115 Lac-Chr13:799248 Lac6g0702 Lac-Chr6:5966444 3.70E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54