Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0117 ATGAGGGTCCGATCATTGCTACTCCCCTGCGCCACCGCAACCGCCGCCGCCGCCGCCGAACCCAATAAAGCGCCTCAATCCTCCTCCTTCTTAATTTCCGACGCTAGCAGCTTCTCCGACACGTCGGCCAACTCGTCGTCGTCGTCGTCGACACCCAGTTCCGACACTAGCTGTTCCAGTCTCCAAAGCAATCTCTCCCTTCAATCCCTACCGTCGATTCCATCTCTTCAAAAACTCCCCACCGTCGCCGATGCCTTAAACGTCACCGTTTCTCAACTCCATCTCGCCGCTTTCAAGCTCCCAATCTCCCACCTCGCCGTCCACGGTCCCCACCTCTACGTGGCCACTGCTCACGAAATCAACGTCTACGATCGAACCACCTTCGACCACGTCACCGCATTCAACGCTCGAGATTCCTCCTCCGGCTCCGTCAAGGGAATCGCCTTTCTCAACGGCGAAATCCTCACTTCTCACCAAGACGGCAAAATCCGCGTCTGGAATAATTCAACGAACAAACACTTCAAATTGGTCAACACTCTCCCAACAGTCAACGACCGCCTTCGCCGATTCATACTCCCGAGGAATTACGTCAACGTCCGCCGTCACAAGAAGGTCCTCTGGATTCAACACGCCGACGCCGTCACCGGACTCGCCGTCAACGGCGATTCGGTTTACTCTGTCTCTTGGGATCGGAGTCTGAAAGTCTGGCGAGGCTCCAACCACCGCTGCGTCGAGTCCGTGAAGGCGGCGCATGAGGACGCCATCAACGCCGTGGCCGTCTCCGCCGCGGGGACCGTGTACACCGGATCCGCCGATCGGAGAATCCGCGTCTGGTCGAAGCCGGCGGCGGAGAAACGGCATGTTCTGGTAGCGACGTTAGAGAAGCACAAGTCGGCGGTGAATGCATTGGCGTTAAACGAGGACGGTTCGTTGCTGTTCTCCGGCGCGTGTGATCGGTCGGTTCTGGTGTGGGAAAGAGAAGACAGTGCGAACCACATGGCGGTGATCGGCGCACTGAGAGGCCACAAAAACGCGATTCTCTGTTTGATCTACGTCTCTGATTTGCTGTTGAGTGGGTCGGCGGATCGGACGGTCAGGGTTTGGCAACGTGGAGCAGACGGGAGTTTTAACTGCTTGTCGGTACTGGAGGGTCATCGGAAAGCGGTGAAATCGCTGGTGGTGGTGTCGGACGGGTCGTCAAACGGCGTCGTATCGGTGTGTAGTGGGAGTCTGGATGGGGAACTGAAAGCGTGGAAACTCTCGTTTTCGAATCTTAACAGTCCATTGCCGAATTCGAATATTATAAAGTGGAGCTGA 1317 56.64 MRVRSLLLPCATATAAAAAEPNKAPQSSSFLISDASSFSDTSANSSSSSSTPSSDTSCSSLQSNLSLQSLPSIPSLQKLPTVADALNVTVSQLHLAAFKLPISHLAVHGPHLYVATAHEINVYDRTTFDHVTAFNARDSSSGSVKGIAFLNGEILTSHQDGKIRVWNNSTNKHFKLVNTLPTVNDRLRRFILPRNYVNVRRHKKVLWIQHADAVTGLAVNGDSVYSVSWDRSLKVWRGSNHRCVESVKAAHEDAINAVAVSAAGTVYTGSADRRIRVWSKPAAEKRHVLVATLEKHKSAVNALALNEDGSLLFSGACDRSVLVWEREDSANHMAVIGALRGHKNAILCLIYVSDLLLSGSADRTVRVWQRGADGSFNCLSVLEGHRKAVKSLVVVSDGSSNGVVSVCSGSLDGELKAWKLSFSNLNSPLPNSNIIKWS 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 817893 819209 + Lag0039913.1 Lac13g0117 591273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0117 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 293 325 - -
Lac13g0117 438 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 36 421 IPR045182 -
Lac13g0117 438 Pfam WD domain, G-beta repeat 377 418 IPR001680 GO:0005515(InterPro)
Lac13g0117 438 Pfam WD domain, G-beta repeat 289 324 IPR001680 GO:0005515(InterPro)
Lac13g0117 438 Pfam WD domain, G-beta repeat 209 236 IPR001680 GO:0005515(InterPro)
Lac13g0117 438 Pfam WD domain, G-beta repeat 336 368 IPR001680 GO:0005515(InterPro)
Lac13g0117 438 Pfam WD domain, G-beta repeat 249 279 IPR001680 GO:0005515(InterPro)
Lac13g0117 438 Gene3D - 285 432 IPR015943 GO:0005515(InterPro)
Lac13g0117 438 Gene3D - 193 284 IPR015943 GO:0005515(InterPro)
Lac13g0117 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 369 IPR001680 GO:0005515(InterPro)
Lac13g0117 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 339 369 - -
Lac13g0117 438 SMART WD40_4 201 237 IPR001680 GO:0005515(InterPro)
Lac13g0117 438 SMART WD40_4 127 167 IPR001680 GO:0005515(InterPro)
Lac13g0117 438 SMART WD40_4 375 419 IPR001680 GO:0005515(InterPro)
Lac13g0117 438 SMART WD40_4 240 279 IPR001680 GO:0005515(InterPro)
Lac13g0117 438 SMART WD40_4 286 325 IPR001680 GO:0005515(InterPro)
Lac13g0117 438 SMART WD40_4 332 369 IPR001680 GO:0005515(InterPro)
Lac13g0117 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 334 IPR001680 GO:0005515(InterPro)
Lac13g0117 438 ProSiteProfiles Cro/C1-type HTH domain profile. 72 93 IPR001387 -
Lac13g0117 438 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Lac13g0117 438 PRINTS G protein beta WD-40 repeat signature 356 370 IPR020472 -
Lac13g0117 438 PRINTS G protein beta WD-40 repeat signature 406 420 IPR020472 -
Lac13g0117 438 Gene3D - 81 190 IPR015943 GO:0005515(InterPro)
Lac13g0117 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 279 IPR001680 GO:0005515(InterPro)
Lac13g0117 438 MobiDBLite consensus disorder prediction 36 57 - -
Lac13g0117 438 FunFam BnaA09g28200D protein 197 283 - -
Lac13g0117 438 SUPERFAMILY WD40 repeat-like 95 421 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0117 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0418 Lac-Chr10:3282941 Lac13g0117 Lac-Chr13:817893 3.10E-42 dispersed
Lac13g0117 Lac-Chr13:817893 Lac3g0123 Lac-Chr3:881160 3.70E-68 dispersed
Lac13g0117 Lac-Chr13:817893 Lac9g0721 Lac-Chr9:14758971 9.00E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49