Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0122 ATGGCTCTGCTTCATCTCTCTCCATGGCTTCTCCTCATCTTTTTCTCTCTACTACTCTTCATCCTAAAAATGAAGAGAACTTCAAATAGAAAAAAGGGTCGTCTTCCTCCAAGCCCACCAAAGCTTCCAATCATAGGAAACTTGCACCAAATTGGGAAGCTCCCTCACAGATCCCTATGGCGTCTCTCTCAGCTCTACGGCCCCATCATCAGCCTCAACCTCGGCGGCATCCAAACCATCGTCATATCCTCAGCCGACGCCGCCCGTGCCCTCTTGAAAACCCACGATCTTCAAAGCTGCAGCAGACCACAGACTGAAAATGTCAAGAAACTCACTCACAACTTCCTCGACATTGTATTTTCGCCTTATGGTGATTACTGGCGAGAGATGCGCAAGATTTGTGTGCTCGAGCTTTTCAGTGTGAAGAGGGTGAAATCTTATGAACCCATTAGAGAACAGGAAGTTGCTTCGCTTGTCCAATCAATTTCAGAATTGGCTTCGACAGGAAGTGTTGTTGATCTTAGTGAGAAGTCCATCGCTCTCACTGCTGGTGTTATTTTCAGAATTGCTTTTGGGAAGAAGTTTGAAGGGTATGGATTTCATGAGCTTGTGAGTGAGGCTGAGGCCTTGTTGGGAAGCTACAGTGCTTCTGAGCTTTTTCCTGTTCCATTTGTGGGGAAGGTCATTGATTGGCTGAGTGGAAGAAAAACTAAACTTGAGAAGGTTTTTAATGAGTTGAATGCTTTGTTTCAAGAGGTGATTGATGAACATCTTTGCCCTGAGAGAGCTAAGCAAGAGCAAGATGATATTATTGATGTGCTTTTGGAAATCAACAAAAAGAGAGTTGAGCCTTGTGTTGTTGCCATTGCTCATGAAAATATCAAAGCCATTCTTTTGAACATATTTTTGGCAGGATTAGACACTAGTTCCATTACAATAGTATGGGCAATGGCAGAGCTTGCTAAGAAACCAAAGATGATGAAGAAAGCGCAGGAAGAAATCAGAAACTATATAGGAAATAGAGAAAAGATAACAGAGAATGACACAGAAGAGCTTCCATATTTGAAAATGATAGTGAAAGAGACATTGAGACTGCATCCACCAGCACCCCTTCTTATTCCAAGAGAAATCATGTCTCATTTCAAAATTGAAGGCTACGATTTTTACCCCAAAACAATAGTTCAAGTGAACGCATGGGCAATGGGACGAGACCACAAATGTTGGATAGACCCCGAAGAGTTTATTCCGGAGCGATTTGCAGAGAGCTTTGTTGATTACAAAGGACAACATTTTGAGTTCTTGCCATTTGGGGCTGGTCGAAGGATTTGCCCCGGGTTGAATATGGGGGTGAAGACCGTGGAGTTTGCTTTGGCAAATCTTTTGTATCATTTTGATTGGAAGTTGCCAAAGGGGATGAAGGAGGAAGATTTGGACATGGAAGAAACGTCAGGTTTTAGCCTCACCATCTACAAGAAGTTGCCTCTCATACTTGTGCCAATCTCATACCATCCATGA 1515 43.1 MALLHLSPWLLLIFFSLLLFILKMKRTSNRKKGRLPPSPPKLPIIGNLHQIGKLPHRSLWRLSQLYGPIISLNLGGIQTIVISSADAARALLKTHDLQSCSRPQTENVKKLTHNFLDIVFSPYGDYWREMRKICVLELFSVKRVKSYEPIREQEVASLVQSISELASTGSVVDLSEKSIALTAGVIFRIAFGKKFEGYGFHELVSEAEALLGSYSASELFPVPFVGKVIDWLSGRKTKLEKVFNELNALFQEVIDEHLCPERAKQEQDDIIDVLLEINKKRVEPCVVAIAHENIKAILLNIFLAGLDTSSITIVWAMAELAKKPKMMKKAQEEIRNYIGNREKITENDTEELPYLKMIVKETLRLHPPAPLLIPREIMSHFKIEGYDFYPKTIVQVNAWAMGRDHKCWIDPEEFIPERFAESFVDYKGQHFEFLPFGAGRRICPGLNMGVKTVEFALANLLYHFDWKLPKGMKEEDLDMEETSGFSLTIYKKLPLILVPISYHP 504
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 854613 856405 - Lag0039918.1 Lac13g0122 591278
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0122 504 CDD CYP71-like 66 495 - -
Lac13g0122 504 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0122 504 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0122 504 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0122 504 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0122 504 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0122 504 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0122 504 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0122 504 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0122 504 PANTHER CYTOCHROME P450 71B11-RELATED 13 500 IPR050193 -
Lac13g0122 504 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0122 504 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0122 504 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0122 504 FunFam Cytochrome P450 83B1 22 498 - -
Lac13g0122 504 Gene3D Cytochrome P450 20 493 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0122 504 Pfam Cytochrome P450 36 488 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0122 504 SUPERFAMILY Cytochrome P450 36 499 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0122 504 Coils Coil 327 347 - -
Lac13g0122 504 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0122 Lac-Chr13:854613 Lac13g0124 Lac-Chr13:875395 1.80E-268 dispersed
Lac13g0122 Lac-Chr13:854613 Lac13g0123 Lac-Chr13:857567 5.50E-257 tandem
Lac10g0502 Lac-Chr10:3853381 Lac13g0122 Lac-Chr13:854613 3.70E-104 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0122 - - - 0.0