Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g0124 | ATGGCTCTCCTTCATCTCTCTCCATGGCTTCCCCTCATCATCTTTTTCTCTCTACTTCTCTTCATCATAAAAATGAAGAGAACTTCAAATAGAAAAAAGGGTCGTCTTCCTCCAAGCCCACCAAAGCTTCCAATCATAGGAAACTTGCACCAAATTGGGAAGCTCCCTCACAGATCCCTATGGCGTCTCTCTCAGCTCTACGGCCCCATCATCAGCCTCAACCTCGGCGGCATTCGAACCACCGTCATATCCTCAGCCGACGCCGCCCGCGCCCTCTTGAAAACCCACGATCTTCAGAGCTGCAGCAGACCACAAACTCAAAATGTCAAGAAACTCACTCACAACTTCCTCGACGTTGCCTTTTCGCCTTATGGAGATTACTGGCGAGAGATACGCAAGATTTGTGTGCTCGAGCTTTTCAGTGTGAAGAGGGTGAAATCTTATGAACCCATCAGAGAACAGGAAGTTGGTTTGCTTGTGGAATCGATTTCGAAACTGGCTTCGAGTGGAAGTGCTGTTGATCTTAGTGAGAAGACCATTGCTCTCACTACTGGTGTTATTTTCAGAATTGTTTTTGGGAAGAAGTTTGAAGGGTGTGGATTTCATGAGCTTGTGAGTGAGGCTGAGGCCTTGATGGGAAGCTACAGTGCTTCTGAGTTTTTTCCTGTTCCATTGGTGGGGAAGTTCATTGATTGGGTTAGTGGAAGAGAAAGTAGAGTTGAGAAGGTTTTTAATGAGTTGAATGCTTTGTTTCAAGAGGTGATTGATGAACATCTTTGTCCTGAGAGAGCTAAGCCAGAGCAAGATGATATTATTGATGTGCTTTTGGAAATCAACAAAAAGAGAGTTGAGCCTTGTACTGTTTCCATTACTCATGAAAATATCAAAGCCATTCTTTTGAACATATTTTTGGCGGGATTAGACACTAGTTCCATTACAATGGTATGGGCAATGGCAGAGCTTGCCAAGAAACCAAAATTGATGAAGAAAGCGCAAGAAGAAATCAGAAATTACATAGGAAACAGAGGGAAGGTAACAGAGAATGACACAGAAGAGCTTCCATATATGAAAATGATAGTGAAAGAGACGCTGAGACTGCATCCACCAGCACCCCTTCTTCTTCCAAGAGAAATCATGTCTCATTTCAAAATTGAAGGCTACGATTTTTACCCCAAAACAGTGGTTCAAGTGAACGCTTGGGCAATTGGACAAGACCCCAAATGCTGGAAAGACCCAGAAGAGTTCATTCCGGAACGATTTGCAGAGAGCTCAGTTGATTACAAAGGACAACATTTTGAGTTGTTGCCATTTGGGGCTGGTCGGAGGATTTGCCCCGGGTTGAATATGGGGGTGAAAATCGTGGAGTTTGCTTTGGCGAGTCTTTTGTACCATTTTGATTGGAAGTTGCCGAAAGGGATGAAGGAGGAAGATTTGGACATGGAAGAAATTTCAGGTTTTAGCCTCACCATCTACAAGAAGTTTCCTCTCATACTTGTTCCAATCTCATATCATCCATGA | 1518 | 43.74 | MALLHLSPWLPLIIFFSLLLFIIKMKRTSNRKKGRLPPSPPKLPIIGNLHQIGKLPHRSLWRLSQLYGPIISLNLGGIRTTVISSADAARALLKTHDLQSCSRPQTQNVKKLTHNFLDVAFSPYGDYWREIRKICVLELFSVKRVKSYEPIREQEVGLLVESISKLASSGSAVDLSEKTIALTTGVIFRIVFGKKFEGCGFHELVSEAEALMGSYSASEFFPVPLVGKFIDWVSGRESRVEKVFNELNALFQEVIDEHLCPERAKPEQDDIIDVLLEINKKRVEPCTVSITHENIKAILLNIFLAGLDTSSITMVWAMAELAKKPKLMKKAQEEIRNYIGNRGKVTENDTEELPYMKMIVKETLRLHPPAPLLLPREIMSHFKIEGYDFYPKTVVQVNAWAIGQDPKCWKDPEEFIPERFAESSVDYKGQHFELLPFGAGRRICPGLNMGVKIVEFALASLLYHFDWKLPKGMKEEDLDMEEISGFSLTIYKKFPLILVPISYHP | 505 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 875395 | 877165 | - | Lag0039920.1 | Lac13g0124 | 591280 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g0124 | 505 | PRINTS | P450 superfamily signature | 358 | 369 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0124 | 505 | PRINTS | P450 superfamily signature | 305 | 322 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0124 | 505 | PRINTS | P450 superfamily signature | 435 | 444 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0124 | 505 | FunFam | Cytochrome P450 83B1 | 23 | 499 | - | - | |
| Lac13g0124 | 505 | Coils | Coil | 328 | 348 | - | - | |
| Lac13g0124 | 505 | Gene3D | Cytochrome P450 | 21 | 494 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0124 | 505 | Pfam | Cytochrome P450 | 37 | 489 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0124 | 505 | PANTHER | CYTOCHROME P450 71B11-RELATED | 14 | 501 | IPR050193 | - | |
| Lac13g0124 | 505 | PRINTS | E-class P450 group I signature | 398 | 422 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0124 | 505 | PRINTS | E-class P450 group I signature | 64 | 83 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0124 | 505 | PRINTS | E-class P450 group I signature | 444 | 467 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0124 | 505 | PRINTS | E-class P450 group I signature | 182 | 200 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0124 | 505 | PRINTS | E-class P450 group I signature | 434 | 444 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0124 | 505 | PRINTS | E-class P450 group I signature | 357 | 375 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0124 | 505 | PRINTS | E-class P450 group I signature | 294 | 311 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0124 | 505 | PRINTS | E-class P450 group I signature | 314 | 340 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0124 | 505 | SUPERFAMILY | Cytochrome P450 | 37 | 500 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0124 | 505 | CDD | CYP71-like | 67 | 496 | - | - | |
| Lac13g0124 | 505 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 437 | 446 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0122 | Lac-Chr13:854613 | Lac13g0124 | Lac-Chr13:875395 | 1.80E-268 | dispersed | |
| Lac13g0124 | Lac-Chr13:875395 | Lac13g0151 | Lac-Chr13:1076732 | 3.10E-151 | dispersed | |
| Lac13g0123 | Lac-Chr13:857567 | Lac13g0124 | Lac-Chr13:875395 | 5.10E-263 | tandem | |
| Lac13g0124 | Lac-Chr13:875395 | Lac13g0125 | Lac-Chr13:881206 | 2.50E-148 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g0124 | - | - | - | 0.0 |