Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0124 ATGGCTCTCCTTCATCTCTCTCCATGGCTTCCCCTCATCATCTTTTTCTCTCTACTTCTCTTCATCATAAAAATGAAGAGAACTTCAAATAGAAAAAAGGGTCGTCTTCCTCCAAGCCCACCAAAGCTTCCAATCATAGGAAACTTGCACCAAATTGGGAAGCTCCCTCACAGATCCCTATGGCGTCTCTCTCAGCTCTACGGCCCCATCATCAGCCTCAACCTCGGCGGCATTCGAACCACCGTCATATCCTCAGCCGACGCCGCCCGCGCCCTCTTGAAAACCCACGATCTTCAGAGCTGCAGCAGACCACAAACTCAAAATGTCAAGAAACTCACTCACAACTTCCTCGACGTTGCCTTTTCGCCTTATGGAGATTACTGGCGAGAGATACGCAAGATTTGTGTGCTCGAGCTTTTCAGTGTGAAGAGGGTGAAATCTTATGAACCCATCAGAGAACAGGAAGTTGGTTTGCTTGTGGAATCGATTTCGAAACTGGCTTCGAGTGGAAGTGCTGTTGATCTTAGTGAGAAGACCATTGCTCTCACTACTGGTGTTATTTTCAGAATTGTTTTTGGGAAGAAGTTTGAAGGGTGTGGATTTCATGAGCTTGTGAGTGAGGCTGAGGCCTTGATGGGAAGCTACAGTGCTTCTGAGTTTTTTCCTGTTCCATTGGTGGGGAAGTTCATTGATTGGGTTAGTGGAAGAGAAAGTAGAGTTGAGAAGGTTTTTAATGAGTTGAATGCTTTGTTTCAAGAGGTGATTGATGAACATCTTTGTCCTGAGAGAGCTAAGCCAGAGCAAGATGATATTATTGATGTGCTTTTGGAAATCAACAAAAAGAGAGTTGAGCCTTGTACTGTTTCCATTACTCATGAAAATATCAAAGCCATTCTTTTGAACATATTTTTGGCGGGATTAGACACTAGTTCCATTACAATGGTATGGGCAATGGCAGAGCTTGCCAAGAAACCAAAATTGATGAAGAAAGCGCAAGAAGAAATCAGAAATTACATAGGAAACAGAGGGAAGGTAACAGAGAATGACACAGAAGAGCTTCCATATATGAAAATGATAGTGAAAGAGACGCTGAGACTGCATCCACCAGCACCCCTTCTTCTTCCAAGAGAAATCATGTCTCATTTCAAAATTGAAGGCTACGATTTTTACCCCAAAACAGTGGTTCAAGTGAACGCTTGGGCAATTGGACAAGACCCCAAATGCTGGAAAGACCCAGAAGAGTTCATTCCGGAACGATTTGCAGAGAGCTCAGTTGATTACAAAGGACAACATTTTGAGTTGTTGCCATTTGGGGCTGGTCGGAGGATTTGCCCCGGGTTGAATATGGGGGTGAAAATCGTGGAGTTTGCTTTGGCGAGTCTTTTGTACCATTTTGATTGGAAGTTGCCGAAAGGGATGAAGGAGGAAGATTTGGACATGGAAGAAATTTCAGGTTTTAGCCTCACCATCTACAAGAAGTTTCCTCTCATACTTGTTCCAATCTCATATCATCCATGA 1518 43.74 MALLHLSPWLPLIIFFSLLLFIIKMKRTSNRKKGRLPPSPPKLPIIGNLHQIGKLPHRSLWRLSQLYGPIISLNLGGIRTTVISSADAARALLKTHDLQSCSRPQTQNVKKLTHNFLDVAFSPYGDYWREIRKICVLELFSVKRVKSYEPIREQEVGLLVESISKLASSGSAVDLSEKTIALTTGVIFRIVFGKKFEGCGFHELVSEAEALMGSYSASEFFPVPLVGKFIDWVSGRESRVEKVFNELNALFQEVIDEHLCPERAKPEQDDIIDVLLEINKKRVEPCTVSITHENIKAILLNIFLAGLDTSSITMVWAMAELAKKPKLMKKAQEEIRNYIGNRGKVTENDTEELPYMKMIVKETLRLHPPAPLLLPREIMSHFKIEGYDFYPKTVVQVNAWAIGQDPKCWKDPEEFIPERFAESSVDYKGQHFELLPFGAGRRICPGLNMGVKIVEFALASLLYHFDWKLPKGMKEEDLDMEEISGFSLTIYKKFPLILVPISYHP 505
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 875395 877165 - Lag0039920.1 Lac13g0124 591280
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0124 505 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0124 505 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0124 505 PRINTS P450 superfamily signature 435 444 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0124 505 FunFam Cytochrome P450 83B1 23 499 - -
Lac13g0124 505 Coils Coil 328 348 - -
Lac13g0124 505 Gene3D Cytochrome P450 21 494 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0124 505 Pfam Cytochrome P450 37 489 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0124 505 PANTHER CYTOCHROME P450 71B11-RELATED 14 501 IPR050193 -
Lac13g0124 505 PRINTS E-class P450 group I signature 398 422 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0124 505 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0124 505 PRINTS E-class P450 group I signature 444 467 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0124 505 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0124 505 PRINTS E-class P450 group I signature 434 444 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0124 505 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0124 505 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0124 505 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0124 505 SUPERFAMILY Cytochrome P450 37 500 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac13g0124 505 CDD CYP71-like 67 496 - -
Lac13g0124 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 437 446 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0122 Lac-Chr13:854613 Lac13g0124 Lac-Chr13:875395 1.80E-268 dispersed
Lac13g0124 Lac-Chr13:875395 Lac13g0151 Lac-Chr13:1076732 3.10E-151 dispersed
Lac13g0123 Lac-Chr13:857567 Lac13g0124 Lac-Chr13:875395 5.10E-263 tandem
Lac13g0124 Lac-Chr13:875395 Lac13g0125 Lac-Chr13:881206 2.50E-148 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0124 - - - 0.0