Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g0125 | ATGCTTGGCCTCGATCAGACAATGCATGGCATTTTCATCTGGGTTCCTCTAATCTTGCTGTTATCTTCTCTGCTGCTTCTTAAAAAGAAGAAGAAGCTTGTTCCTCCAAGCCCTCCAAAGCTTCCTTTGTTGGGCCATCTGCACCTCATTGGCTCCCATCCCCATCGCTCTTTCTGGGAACTTTCAAAAAAATATGGCCCCATCATGTTCCTCAAACTCGGCTCCGTCCCGACCATCGTGATCTCCTCCGCCGCCGCTGCAAAAGAAGTGCTAAAAGTTCACGACCTTGCTTGTTGCAGCCGGCCTCGCTCGAACGCCGGTGGGAAATTTTCATACAACTATTTAGACATAGGTCTATGCCCATATGGTGATCATTGGAGGGAAGTTCGAAAGATTTGTGTGCTCGAGCTGTTCAGTGCTAAGAGGGTGCAGTCGTTTCAACTCATTAGAGAAGAAGAGATTGGTCTGCTGGTAAAGTCCATCTCTGAGTCTGAATCCTCCGCTAATTCTGGCAGTCCAGTTGATCTGAGTGAGAAATTTTATTCTCTCACTGCAAATATAATAACCCGGATTGCTTTTGGAAAGAGCTTCAGAGGGGGTGAGCTGGATGATGAGAATTTTCAACAAGTTATTCGTAGGGCAATGAAAGCATTGGGAAGCTTTTCGGCGACTGAATTCTTTCCCTATGTGGGTTGGATCGTTGATCGGCTCAGTGGTGCTCATAGTCGATTGGAGAAGAGTTTTGCTGAGTTGGATGCTTTTTTCCAACATGTAGTGGATGATCGCATCAACTTTCGAGAGACTTCTCTGAATGATCAAGAAAACATTGTCGATGTTTTGTTGAAAATGGGGAGAGATCGCTCTGAATTTGATGCAGTGCAACTCACTAGAGATTGCATCAAGGCTCTTGTCATGGATATATTTATGGCGGGAGTGGAAACAGGAGCAAATACCCTTGTTTGGGCAATGTCAGAGTTGATCAAGAATCCAATGGTCTTGAAGAAGCTACAAGGTGAGATCAGAAGTTGTGTAAAAGAAGATCAAGTGAAGGAGAGCGACCTTGAAAAGCTTCAATATCTAAAAATGGTGGTGAAAGAGGTTCTAAGGTTGCATGCACCAGCCCCACTTTTGCTTCCAAGAGAAACCATGTCCCATTTCAAGCTCGATGGTTATGATATTGGGCCCAAAACCCAGCTTCATGTTAACGTATGGGCAATTGGACGTGACCCAGAATTGTGGACAAATCCAGAAGAGTTCTTGCCGGAGAGATTCATAGGAAGTAATATCGATTACAAAGGACAAAATTTCGAGTTATTACCGTTTGGATCAGGTCGGAGAATTTGTCCTGGGATGAACATGGCGACCATTACAGTAGAGCTAGCGTTGGCTAATCTATTGTTGTGCTTTGATTGGAAATTACCAAACAAGATGAAAGAAGAAGATGTAGATATGGAAGAGGACGTTGGTCTTGTAGTTACCAAGAAATCACCACTTGAACTTGTTCCAATCCGTTACTTCAATTCCAACTAA | 1530 | 43.99 | MLGLDQTMHGIFIWVPLILLLSSLLLLKKKKKLVPPSPPKLPLLGHLHLIGSHPHRSFWELSKKYGPIMFLKLGSVPTIVISSAAAAKEVLKVHDLACCSRPRSNAGGKFSYNYLDIGLCPYGDHWREVRKICVLELFSAKRVQSFQLIREEEIGLLVKSISESESSANSGSPVDLSEKFYSLTANIITRIAFGKSFRGGELDDENFQQVIRRAMKALGSFSATEFFPYVGWIVDRLSGAHSRLEKSFAELDAFFQHVVDDRINFRETSLNDQENIVDVLLKMGRDRSEFDAVQLTRDCIKALVMDIFMAGVETGANTLVWAMSELIKNPMVLKKLQGEIRSCVKEDQVKESDLEKLQYLKMVVKEVLRLHAPAPLLLPRETMSHFKLDGYDIGPKTQLHVNVWAIGRDPELWTNPEEFLPERFIGSNIDYKGQNFELLPFGSGRRICPGMNMATITVELALANLLLCFDWKLPNKMKEEDVDMEEDVGLVVTKKSPLELVPIRYFNSN | 509 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 881206 | 882985 | + | Lag0039921.1 | Lac13g0125 | 591281 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g0125 | 509 | PRINTS | P450 superfamily signature | 310 | 327 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0125 | 509 | PRINTS | P450 superfamily signature | 448 | 459 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0125 | 509 | PRINTS | P450 superfamily signature | 362 | 373 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0125 | 509 | PRINTS | P450 superfamily signature | 439 | 448 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0125 | 509 | Gene3D | Cytochrome P450 | 26 | 502 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0125 | 509 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 441 | 450 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac13g0125 | 509 | FunFam | Cytochrome P450 83B1 | 22 | 501 | - | - | |
| Lac13g0125 | 509 | Pfam | Cytochrome P450 | 35 | 495 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0125 | 509 | SUPERFAMILY | Cytochrome P450 | 35 | 503 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0125 | 509 | CDD | CYP71-like | 64 | 498 | - | - | |
| Lac13g0125 | 509 | PANTHER | CYTOCHROME P450 71B11-RELATED | 16 | 503 | IPR050193 | - | |
| Lac13g0125 | 509 | PRINTS | E-class P450 group I signature | 299 | 316 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0125 | 509 | PRINTS | E-class P450 group I signature | 319 | 345 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0125 | 509 | PRINTS | E-class P450 group I signature | 438 | 448 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0125 | 509 | PRINTS | E-class P450 group I signature | 448 | 471 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0125 | 509 | PRINTS | E-class P450 group I signature | 183 | 201 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0125 | 509 | PRINTS | E-class P450 group I signature | 402 | 426 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0125 | 509 | PRINTS | E-class P450 group I signature | 361 | 379 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0125 | 509 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0125 | Lac-Chr13:881206 | Lac13g0151 | Lac-Chr13:1076732 | 2.30E-218 | dispersed | |
| Lac13g0124 | Lac-Chr13:875395 | Lac13g0125 | Lac-Chr13:881206 | 2.50E-148 | tandem | |
| Lac13g0125 | Lac-Chr13:881206 | Lac13g0126 | Lac-Chr13:884899 | 5.40E-28 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g0125 | - | - | - | 0.0 |