Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g0129 | ATGCTCAGCATTATTTTCATCTTGATTCCTCTAATCTTCCTGCTCTCTTCTCCATTGCTTCTTAAAACAAAGAAGAAGCTTCTTCCTCCAGGCCCTCCAAAGCTTCCATTGTTGGGTCATCTGCACCTCCTTGGCTCTCTTCCCCATCGCTCTCTGTGGAAACTCTCAAAAAAACATGGCCCCATCATGCTTCTCAAATTCGGCGCCGTCCCAACCCTCGTAATCTCCTCAGCCGCCGCTGCAAAAGAGATGTTCAAACTCCACGATCTCGCTTCTTGCAGCCGCCCTCGCTTAGCAGCCACCAGAAGATTTTCGTACAACTTTTTGGACCTAAATTTTTCGCCATACGGCGATCGCTGGAGAGAGCTTCGAAAGATTTGTATCCTCGAGCTCTTCAGCTCCAAACGAGTGCAATCCTTTCAGCATATTAGAGAAGAGGAAGTGGGTCAGCTCTTAAACTCCATTTCTCGATCAACTCTAGTTGAAATGAAGGAGAAATCTTATTCTCTCACTGCGAATATAATGGCCCGGGTTGTTTTTGGCACGAGCTTTAGAGGGAATGAGCTAGATAATGAAAATTTTCACCGAGTTATGCAGAGAGTGAGTGTGGCGTTGGGAAGCTTCTCGGCGACCGACTTCTTTCCCGCTTTCGGTTGGGTTATCGATCGGCTCAATGGTGTTCATGGGAGGCTGGAGAAAAGCTTTGCTGAATTGGATGCTTTCTTCCAACGTGTGGTTGATGATCGCATAAAGTTTGGAGCAATAACTTCTAAGAGTGAAGAAAATATTGTTGATGTTTTGTTGAAAATGGAGAGAGACTGCTCTGAATCTGATGGTCTGCAACTTACTAAAAATTGCATCAAGGCACTTATCATGGACGTATTTTTAGCTGGAGTGGAGTCAGGAGCAGGGACCATTCTCTGGGCAATGTCGGAATTGATTAAGAATCCAAGAGTGATGAAGAAGCTACAATACGAGATCAGAAGCTGCATAAAAGAAGATCAAGTAAAGGAGAGCGATCTCAAAAAGCTTGAATATCTAAAAATGGTTGTGAAAGAGGTTCTAAGGTTGCATGCGCCCGCTCCACTTCTCCTTCCAAGAGAAACCATGTCTCATTTCAAGCTAAGTGGTTACGATATTGACCCCAAAACTCATGTCCATGTCAATATATGGGCGATTGGACGAGATCCAAATTCTTGGACTAACCCAGAAGAATTCTTGCCCGAGAGATTCATAGGAAGCAATATCGACTACAGAGGGCAGAATTTCGAGTTGTTACCATTTGGAGCTGGTCGAAGAATTTGTCCTGGTATGAACATGGGGATCGTTACTGTGGAGCTGGCATTGGCGAATCTATTGTTGTGTTTTGATTGGAAATTGCCGTATGGAATGAAAGAAGAAGATGTTGACATGGAAGAGGATGTTGGTGTAACAGCTACAAAGAAAACACTTCTTAAACTTGTTCCAATCCGCCGCCTTTAA | 1482 | 44.13 | MLSIIFILIPLIFLLSSPLLLKTKKKLLPPGPPKLPLLGHLHLLGSLPHRSLWKLSKKHGPIMLLKFGAVPTLVISSAAAAKEMFKLHDLASCSRPRLAATRRFSYNFLDLNFSPYGDRWRELRKICILELFSSKRVQSFQHIREEEVGQLLNSISRSTLVEMKEKSYSLTANIMARVVFGTSFRGNELDNENFHRVMQRVSVALGSFSATDFFPAFGWVIDRLNGVHGRLEKSFAELDAFFQRVVDDRIKFGAITSKSEENIVDVLLKMERDCSESDGLQLTKNCIKALIMDVFLAGVESGAGTILWAMSELIKNPRVMKKLQYEIRSCIKEDQVKESDLKKLEYLKMVVKEVLRLHAPAPLLLPRETMSHFKLSGYDIDPKTHVHVNIWAIGRDPNSWTNPEEFLPERFIGSNIDYRGQNFELLPFGAGRRICPGMNMGIVTVELALANLLLCFDWKLPYGMKEEDVDMEEDVGVTATKKTLLKLVPIRRL | 493 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 917944 | 921274 | + | Lag0039925.1 | Lac13g0129 | 591285 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g0129 | 493 | SUPERFAMILY | Cytochrome P450 | 29 | 492 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0129 | 493 | CDD | CYP71-like | 58 | 485 | - | - | |
| Lac13g0129 | 493 | PANTHER | CYTOCHROME P450 71B11-RELATED | 7 | 490 | IPR050193 | - | |
| Lac13g0129 | 493 | FunFam | Cytochrome P450 83B1 | 16 | 488 | - | - | |
| Lac13g0129 | 493 | Gene3D | Cytochrome P450 | 21 | 490 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0129 | 493 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 428 | 437 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac13g0129 | 493 | Pfam | Cytochrome P450 | 29 | 484 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0129 | 493 | PRINTS | E-class P450 group I signature | 306 | 332 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0129 | 493 | PRINTS | E-class P450 group I signature | 389 | 413 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0129 | 493 | PRINTS | E-class P450 group I signature | 56 | 75 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0129 | 493 | PRINTS | E-class P450 group I signature | 170 | 188 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0129 | 493 | PRINTS | E-class P450 group I signature | 348 | 366 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0129 | 493 | PRINTS | E-class P450 group I signature | 425 | 435 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0129 | 493 | PRINTS | E-class P450 group I signature | 435 | 458 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0129 | 493 | PRINTS | E-class P450 group I signature | 286 | 303 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0129 | 493 | PRINTS | P450 superfamily signature | 426 | 435 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0129 | 493 | PRINTS | P450 superfamily signature | 349 | 360 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0129 | 493 | PRINTS | P450 superfamily signature | 297 | 314 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0129 | Lac-Chr13:917944 | Lac13g0151 | Lac-Chr13:1076732 | 2.40E-217 | dispersed | |
| Lac13g0127 | Lac-Chr13:904764 | Lac13g0129 | Lac-Chr13:917944 | 4.70E-27 | proximal | |
| Lac13g0128 | Lac-Chr13:907153 | Lac13g0129 | Lac-Chr13:917944 | 4.90E-85 | tandem | |
| Lac13g0129 | Lac-Chr13:917944 | Lac13g0130 | Lac-Chr13:921857 | 2.10E-200 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g0129 | - | - | - | 0.0 |