Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g0130 | ATGCTTAGCCTCTGGATCCACACCATTTTCATCTGGGTTCCTCTAATCTTGCTCTTATCTTCTCTGCTGCTTCTTAAAACGAAGAAGAAGCTTCTTCCTCCAAGCCCTCCAAAGCTTCCTCTGTTGGGCCATCTGCACCTCATCGGCTCCCTCCCCCACCGCTCTTTTTGCCAACTTTCAAAACAACACGGCCCCGTCATGCTCCTCAAACTCGGCTCCGTCCCAACCATCGTAATCTCCTCCGCCGCCGCCGCAAGAGACCTCTTTAAACTCCACGACCTCGCTTCTTGCAGCCGCCCTCTCTTATACGGCAATGGAAGACTGTCCTACAACTATCTCGACATCAGTTTCTCTCCATACGGCGACCACTGGAAGGAAGTTCGAAAGATCTGCGTGTCCGAGCTCTTCAACGCCTGGCGGGTTCAGTCGTTTCAGCTCATTAGAGAAGAAGAGGTGGGATTGTTGTTAAACTCCATCGCTGAATCCTCGTCTTCTGCAACTCCGGTTGATCTGAGTGAGAAATCCTATTCTCTCACTGCAAACATAATAACTCGGATGGCTTTTGGGAAGAGCTTTAGAGGGGGTGAGCTGGACGATGAGAATTTTCAAGGTGTTGTTCGAAGAGCGGTGGCGGCGATGGGAAACTTCTCGGCGGACTTCTTTCCCAGAGTGGGTTGGGTTGTTGATTGGCTCAGTGGCGCTCGTGGGAGGTTGGAGAAGACCTTTGCTGAGTTGGATGCCTTTTTCGAACATGTAATTGATGATCGCATCAACTTCGTCGAGAGGAGTTGTGAGAATGAAGAGAACGTTATCGATGTTCTCTTGAAATTGGAGAGAGAACGCTCGGCTGACTGTGGTGGTTTGCAACTTACTAGAGATTGCATCAAGGCACTTACCATGGATATATTTCTAGCTGGAGTTGACACAGGAGCCGGGGTCATTGTTTGGGCAATGGCAGAGCTGGTTAGGAATCCAAGGGTGATGAAAAAGCTACAAGATGAGATAAGAAACTGCATAAAAGAAGATCAAGTGAAGGAAAGTAAGCTCGAAAAGCTTCAATATCTAAAACTGGTTGTGAAAGAGGTTCTAAGATTGCACCCTACCGTCCCACTTCTCCTTCCAAGAGAAACCATGTCTCATTTCAAGCTCAACAATTACGATATTGACCCCAAAGCTCATCTTTATGTCAATGTTTGGGCGATCGGACGAGACCCAAATTATTGGACTAACCCGGAAGAATTCTTACCGGAGAGATTTATAGGAAGCAATATAGATTACAGAGGACAAAATTTTGAGTTTTTACCATTCGGAGCGGGTCGAAGAAGTTGTCCAGGGATGAACATGGCCATCATTGCAGTGGAGCTCACGCTAGCTAATCTGTTACTTTCTTTTGATTGGAAATTACCAGATGGAATGAAAGAAGAAGATTTGGACATGGAAGAGGATGCTGGTCTAACTGCTACCAAAAAATCACCTCTTAAACTCATTCCAATTTGCCACTAA | 1503 | 46.57 | MLSLWIHTIFIWVPLILLLSSLLLLKTKKKLLPPSPPKLPLLGHLHLIGSLPHRSFCQLSKQHGPVMLLKLGSVPTIVISSAAAARDLFKLHDLASCSRPLLYGNGRLSYNYLDISFSPYGDHWKEVRKICVSELFNAWRVQSFQLIREEEVGLLLNSIAESSSSATPVDLSEKSYSLTANIITRMAFGKSFRGGELDDENFQGVVRRAVAAMGNFSADFFPRVGWVVDWLSGARGRLEKTFAELDAFFEHVIDDRINFVERSCENEENVIDVLLKLERERSADCGGLQLTRDCIKALTMDIFLAGVDTGAGVIVWAMAELVRNPRVMKKLQDEIRNCIKEDQVKESKLEKLQYLKLVVKEVLRLHPTVPLLLPRETMSHFKLNNYDIDPKAHLYVNVWAIGRDPNYWTNPEEFLPERFIGSNIDYRGQNFEFLPFGAGRRSCPGMNMAIIAVELTLANLLLSFDWKLPDGMKEEDLDMEEDAGLTATKKSPLKLIPICH | 500 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 921857 | 923628 | + | Lag0039926.1 | Lac13g0130 | 591286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g0130 | 500 | Gene3D | Cytochrome P450 | 25 | 496 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | SUPERFAMILY | Cytochrome P450 | 33 | 497 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | PANTHER | CYTOCHROME P450 71B11-RELATED | 11 | 498 | IPR050193 | - | |
| Lac13g0130 | 500 | Pfam | Cytochrome P450 | 33 | 488 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | PRINTS | P450 superfamily signature | 305 | 322 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | PRINTS | P450 superfamily signature | 434 | 443 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | PRINTS | P450 superfamily signature | 357 | 368 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | PRINTS | P450 superfamily signature | 443 | 454 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | PRINTS | E-class P450 group I signature | 433 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | PRINTS | E-class P450 group I signature | 443 | 466 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | PRINTS | E-class P450 group I signature | 60 | 79 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | PRINTS | E-class P450 group I signature | 178 | 196 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | PRINTS | E-class P450 group I signature | 294 | 311 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | PRINTS | E-class P450 group I signature | 314 | 340 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | PRINTS | E-class P450 group I signature | 356 | 374 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | PRINTS | E-class P450 group I signature | 397 | 421 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0130 | 500 | CDD | CYP71-like | 62 | 493 | - | - | |
| Lac13g0130 | 500 | FunFam | Cytochrome P450 83B1 | 20 | 496 | - | - | |
| Lac13g0130 | 500 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 436 | 445 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0130 | Lac-Chr13:921857 | Lac13g0151 | Lac-Chr13:1076732 | 5.20E-207 | dispersed | |
| Lac13g0129 | Lac-Chr13:917944 | Lac13g0130 | Lac-Chr13:921857 | 2.10E-200 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g0130 | - | - | - | 0.0 |