Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0178 ATGGAGGTCGACGGCGGAGCAGCGGCGGCTCAGCCGCGAAAGTTCTCTCTCCCGGTGGACTCCGAACACAAATCCACCAAATTCAACATCTTCTCCGTCGCAGCGCCGCACATGCGAGCGTTTCACCTCTCGTGGATTTCGTTCTGTGCCTGTTTCATTTCCAGTTTCGCGGCGGCGCCGCTGCTGCCGGTGATCCGCGACAACCTCAACCTGACGGACACCGACATTGGCAACGCCGGAATCGCGTCCGTCTCCGGCGCAGTCTTCGCCCGAGTCATGATGGGTTCGGCCTGCGACTTGGTCGGACCACGGCTGGCCTCCGCCGCGCTCATCTTGATAACCTCACCCGCGGTTTACCTGACCTCCATAGCGTCCTCCCCTGTTTCGTTCTTCCTCGTCCGTTTCTTCACCGGCTTCTCCCTCGCCACATTCGTCTCGACCCAGTTCTGGATGAGCTCGATGTTCTCCTCCACCGTCGTCGGCACCGCGAACGGCGTCGCCGGCGGGTGGGGGAACCTGGGCGGCGGCGCAACGCAACTCATCATGCCGTACGTGTTCGCCATCATCGAACACATCGGCGCCACGAAATTCACCGCGTGGAGAATCGCCTTCTTCATCCCGGCGCTGTTCCAGACGCTGACGGCGTTCGCGATTCTGCTGCTCGGCCAGGACTCCCCGGACGGGAACTTCCGGCGGCTGCAGAAATCGGGCGACAAGGCGAAAGACAAATTCTCGAAGGTGCTGTACCACGGGGCGAGTAATTACAGGGGGTGGATTCTGGCATTGACTTATGGGTACTGCTTCGGAGTGGAATTGACGATCGACAACATAATCGCGAACTATTTCTACGACCGGTTCGATCTGAATCTGCACACGGCGGGGATAATAGCGGCGAGTTTTGGGCTGGCGAATTTGTTTTCGAGGCCGTACGGCGGGATATTGTCGGACGTGGTGGCGAGGAGGTTCGGGATGAGGGGGCGGCTGTGGGCGCTGTGGGTGGTGCAGACTTTGGGGGGAGTTTTCTGTGTGATTCTTGGCTTAGTTGGTTCGCTCAGTGTTTCCATTGCTGTTATGATCATTTTCTCTCTCTTTGTTCAAGCCGCTTGTGGACTCACTTTTGGTGTCGTTCCTTTCGTCTCTCGAAGGTCATTGGGAGTGATATCGGGCATGACGGGCGGCGGCGGCAACGTGGGGTCAGTGTTGACACAGCTGATATTCTTCCGAGGCTCAAGGTACACTAAAGAAAGAGGAATCACTCTAATGGGAGTGATGATAATTGGGTGCACTCTCCCGCTTCTGTTAATCTTTTTCCCGCAATGGGGCGGCATGCTGTGCGGCCCGTCATCTAAGATTGCTTCTGAGGAAGACTATTACACTTCGGAGTGGAGCCCTGAGGAGCAGGCCAAGGGCTACCATTTGGCCAGCGTCAAGTTCGCTGAGAATAGTCGGCGTGAGCGAGGGAAGAGCCAGAAGGGCACTGCTGATGCCCAGGATGAGGCCTAG 1503 57.68 MEVDGGAAAAQPRKFSLPVDSEHKSTKFNIFSVAAPHMRAFHLSWISFCACFISSFAAAPLLPVIRDNLNLTDTDIGNAGIASVSGAVFARVMMGSACDLVGPRLASAALILITSPAVYLTSIASSPVSFFLVRFFTGFSLATFVSTQFWMSSMFSSTVVGTANGVAGGWGNLGGGATQLIMPYVFAIIEHIGATKFTAWRIAFFIPALFQTLTAFAILLLGQDSPDGNFRRLQKSGDKAKDKFSKVLYHGASNYRGWILALTYGYCFGVELTIDNIIANYFYDRFDLNLHTAGIIAASFGLANLFSRPYGGILSDVVARRFGMRGRLWALWVVQTLGGVFCVILGLVGSLSVSIAVMIIFSLFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGSVLTQLIFFRGSRYTKERGITLMGVMIIGCTLPLLLIFFPQWGGMLCGPSSKIASEEDYYTSEWSPEEQAKGYHLASVKFAENSRRERGKSQKGTADAQDEA 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1255768 1258216 + Lag0039974.1 Lac13g0178 591334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0178 500 Gene3D MFS general substrate transporter like domains 34 230 IPR036259 -
Lac13g0178 500 FunFam High affinity nitrate transporter 2.5 33 229 - -
Lac13g0178 500 ProSiteProfiles Major facilitator superfamily (MFS) profile. 28 439 IPR020846 GO:0022857(InterPro)
Lac13g0178 500 Pfam Major Facilitator Superfamily 45 401 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Lac13g0178 500 SUPERFAMILY MFS general substrate transporter 35 437 IPR036259 -
Lac13g0178 500 Gene3D MFS general substrate transporter like domains 239 441 IPR036259 -
Lac13g0178 500 FunFam Nitrate transporter 2.1 241 442 - -
Lac13g0178 500 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 10 488 IPR044772 GO:0005886(PANTHER)|GO:0015112(PANTHER)|GO:0015112(InterPro)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
Lac13g0178 500 CDD MFS_NRT2_like 41 434 IPR044772 GO:0015112(InterPro)
Lac13g0178 500 MobiDBLite consensus disorder prediction 479 500 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0178 Lac-Chr13:1255768 Lac7g2458 Lac-Chr7:41898927 4.10E-172 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0178 K02575 - csv:101212365 840.106