Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0181 ATGAAACCCTACAGCTTCTCCTCTTCAATCGCATTGCTTCTGATTCTCTTGTGTCGTCTTGTCGTTCAATCTGCGGCTGATCCAAGAGCCACTGAGGCGGCTCTGATATGTTCGAACAACACTGCTTCGCCGCCGGAGCGATCGACCTTCGTGTCGAATTTCTTGGCCTCCATGGATGCGGTTACTCCTCTTATTGCTTCACAGCGATATGCAGACGTTGTGAATGGGACTGGAAATACGACTGTTTATGCTTTTGGCGAGTGTATGAATGATCTTTCGCAATCGGATTGCGATCTCTGTTTTGCGCAGATGAAAACTCAGATCCTGCGGTGTCTCCCCTTTCAGCTTGCTACTCGCGGGGGCAGACTCTTCTATGACGGGTGCTATGTTAGGTATGATTATTACAATTTCTTCAACGAATCTTTGAGTTCTGTGGATAAGGTTGTATGTGGGAAATCGGATTATCGTGGGAATCGGACGGTTTTTAGTGATAATGCTATGAAATTGGCGAGGAATTTGAGTGTAGTGGCGCCTAAGAACGATGGCTTTGCTGTGGGATCGGTGAATTTTAGAAATGTGTCCGTCTTTGGATTGGCTCAGTGTTGGAAATTTGTGAAAGGGGCTTCTTGCTCGAAGTGTTTGGTGGATGCAGCTAAGGAAATAGGTTCGTGTCCTCCAAAAGCCGAAGGAAGGGTGTTGAATGCCGGCTGTTACTTCAGATATTCAACTGAACGATTTTATTTCAACAGCACGGCAACCTCCACTGGAGGAAATGGAAGGAGCCGTTTGGCGATAATTTTGGCATCAGTGTCTGCTGCCGTGGCTGCTGCATTGATTACGGCAACGGCTGTTTTCTGTGCCAGAAGGAGAGTAGTGAGGAAACGCAAAGAGAAAAAGCAACTCGGCCCTCTTGTGGCTATCATTAACAAGTCCAAGCTAAATTTTTCATACGAAACTCTTGAGAGGGCCACAAATTACTTTGACCAATCCAATAAACTGGGACAAGGAGGTTCTGGTTCAGTTTATAAAGGAACTCTATCAAATGGCAGAGTCGTAGCAATCAAGAGGCTTTTCTTCAATACAAGACAATGGGTGGATCATTTCTTTAATGAAGTAAATTTGATTAGTGGCATCCGACACAAAAATCTTGTTGGGCTGTTGGGATGCAGTATTACAGGCCCAGAAAGCCTCCTTGTTTATGAATACGTGCCAAATCAAAGCCTTCACGATTACCTTTTTGGTAACAAGAACGTCCAGCCACTGAGTTGGGAATCCAGGTTTAAGATTGTTTTAGGCACAGCTGAAGGCTTGGCATATCTTCATGAGGAGTCGAAGGTGAAAATCATTCATCGGGACATAAAATTAAGCAATATTCTGCTGGACAATGATTTCACTCCAAAGATTGCTGATTTTGGACTTGCTAGACTGCTTCCTGAAGATAAGACACACATTAGCACTGCAATTGCTGGCACACTAGGTTACATGGCTCCAGAATATGTAGTGCGTGGCAAGTTATCAGAGAAGGCAGATGTTTACAGTTTCGGAGTTTTTGCCATTGAAGTTCTCACAGGAAGGAGGAACGGTCACTTCTATCAAGATTCAACGTCTATCTTACAAAGGGTATGGAATTTTTATGGAGAGGGTAGGCTATATGCAGCTGTCGATCCCGTCCTTGCGGGTTTTTATCCACGAGATGAAGCATCTCGGTTGCTTCAAATAGGTCTGGTTTGTGTGCAAGCCTTTGCTGACTTGAGGCCTTCCATGTCGATGGTTGTGAAAATGCTTACAGCAAATTATGAGATCCCCCAGCCAAAACAGCCTCCATATCTTCATCCTTCAAGTGGAGACTTAAAACCCCAGAATTCCTCAGAGTCATCCAATCCCATGTATTTTAACTCGCGTTCTTCACAACCTATCATGACTCAAAGCATCATCGATCCAAGATAA 1947 44.48 MKPYSFSSSIALLLILLCRLVVQSAADPRATEAALICSNNTASPPERSTFVSNFLASMDAVTPLIASQRYADVVNGTGNTTVYAFGECMNDLSQSDCDLCFAQMKTQILRCLPFQLATRGGRLFYDGCYVRYDYYNFFNESLSSVDKVVCGKSDYRGNRTVFSDNAMKLARNLSVVAPKNDGFAVGSVNFRNVSVFGLAQCWKFVKGASCSKCLVDAAKEIGSCPPKAEGRVLNAGCYFRYSTERFYFNSTATSTGGNGRSRLAIILASVSAAVAAALITATAVFCARRRVVRKRKEKKQLGPLVAIINKSKLNFSYETLERATNYFDQSNKLGQGGSGSVYKGTLSNGRVVAIKRLFFNTRQWVDHFFNEVNLISGIRHKNLVGLLGCSITGPESLLVYEYVPNQSLHDYLFGNKNVQPLSWESRFKIVLGTAEGLAYLHEESKVKIIHRDIKLSNILLDNDFTPKIADFGLARLLPEDKTHISTAIAGTLGYMAPEYVVRGKLSEKADVYSFGVFAIEVLTGRRNGHFYQDSTSILQRVWNFYGEGRLYAAVDPVLAGFYPRDEASRLLQIGLVCVQAFADLRPSMSMVVKMLTANYEIPQPKQPPYLHPSSGDLKPQNSSESSNPMYFNSRSSQPIMTQSIIDPR 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1270615 1274211 + Lag0039977.1 Lac13g0181 591337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0181 648 CDD STKc_IRAK 333 596 - -
Lac13g0181 648 FunFam Cysteine-rich receptor-like protein kinase 2 403 603 - -
Lac13g0181 648 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524(InterPro)
Lac13g0181 648 Gene3D Phosphorylase Kinase; domain 1 286 402 - -
Lac13g0181 648 FunFam Cysteine-rich receptor-like protein kinase 2 30 137 - -
Lac13g0181 648 Gene3D Transferase(Phosphotransferase) domain 1 403 606 - -
Lac13g0181 648 ProSiteProfiles Gnk2-homologous domain profile. 32 137 IPR002902 -
Lac13g0181 648 FunFam Cysteine-rich receptor-like protein kinase 2 293 402 - -
Lac13g0181 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0181 648 ProSiteProfiles Protein kinase domain profile. 327 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0181 648 Pfam Salt stress response/antifungal 150 243 IPR002902 -
Lac13g0181 648 Pfam Salt stress response/antifungal 37 134 IPR002902 -
Lac13g0181 648 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 166 627 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Lac13g0181 648 MobiDBLite consensus disorder prediction 605 648 - -
Lac13g0181 648 ProSiteProfiles Gnk2-homologous domain profile. 143 246 IPR002902 -
Lac13g0181 648 SUPERFAMILY Protein kinase-like (PK-like) 313 626 IPR011009 -
Lac13g0181 648 Gene3D - 31 137 IPR038408 -
Lac13g0181 648 Gene3D - 144 246 IPR038408 -
Lac13g0181 648 FunFam Cysteine-rich receptor-like protein kinase 3 146 246 - -
Lac13g0181 648 SMART serkin_6 327 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0181 648 Pfam Protein kinase domain 328 526 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0181 648 MobiDBLite consensus disorder prediction 615 648 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0181 Lac-Chr13:1270615 Lac6g1293 Lac-Chr6:12965366 9.90E-126 dispersed
Lac10g3114 Lac-Chr10:45520224 Lac13g0181 Lac-Chr13:1270615 2.20E-09 transposed
Lac3g0373 Lac-Chr3:2804742 Lac13g0181 Lac-Chr13:1270615 4.30E-79 transposed
Lac8g0254 Lac-Chr8:2842891 Lac13g0181 Lac-Chr13:1270615 1.60E-144 transposed
Lac13g0181 Lac-Chr13:1270615 Lac6g1291 Lac-Chr6:12958609 2.40E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85841 PF00069 Pkinase 2.40E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0181 - - - 0.0