Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0187 ATGGCGAGAATACCATCACTACCAGGGCTCAATCTGTTCTCCTCCCTTCCTTCAGCCCCACCGCCGCACGATCCTTCTTCCAGTTCTTCTCCTTCAACGCCAATCCCAATTCCCAAATACCCTCCACCCAAATCCCGCACTCTTCGAACCAATCCTCCAAAAACCCCCAATCCATCCCCTAATCCTGCTCTCAAGACCTTCCACCGCCGTTCCAAGTATTATAAGCCGGTCAAAGACGGAGTAATCTCGTCCCACGGCGATCGCGCCGTCGTCATCGGCGAATCGGGTGTGTCCTATCTGCTCCCTGACGCTCCATTCGAGTTCCAGTACAGCTACTCCGAGACCCCCAAGGCCAAGCCCATTGCGATTCGCGAACCGGCTTTTCTGCCCTTTGCACCACCGACGATGCCGAGGCCTTGGACTGGCAAAGCTCCATTGAAGAGCTCGAAGAAGAAAATCCCTCTCTTCGATTCCTTCAATCCGCCCCCTCCTGACACGAAGGGAGTTAAGCAAGTCGAAATGCCTGGTCCGTTCCCGCTTGGGAAGTTCCCGAAGGAGGGGAAAAGCAGAGAGGAGATTCTTGGGGAGCCTCTGAAGAATTGGGAGATTCGCATGCTTGTGAAACCCCATTTGTCACATAATCGTCAGGTTAATCTTGGAAGGGATGGACTAACGCATAATATGTTGGAATTGATACATTCGCATTGGAAGCGGCAGCGTGTCTGTAAAGTTCGTTGTAAAGGTGTTCCCACAGTAGATATGGACAATATTTGCCATCATCTGGAGGAAAAAACAGGTGGAAAAATAATTCACCGAGTTGGTGGTGTATTATATCTTTTCAGAGGTAGAAACTACAATTATCGTACTCGCCCTCAATACCCAGTAATGCTCTGGAAACCTGCGGCCCCTGTGTATCCAAAACTTATTCAAGAAGCTCCAGAAGGGTTGACAAAAGAGGAAGCTAATGAGCTGAGGATGAAAGGAAAAAATCTTTTGCCAATATGTAAATTAGCAAAAAATGGTGTGTACATTTCCTTGGTGAATGACGTAAGGCATGCTTTTGAAGGAAGCATTTTAGTGAAGATTGATTGCACTGGGATGCATGAAAGTGATTATAAAAAGTTGGGTGCTAAACTCAAGGAATTGGTTCCTTGTGTGTTACTATCATTTGATAGCGAACAGATATTGATGTGGAGGGGAAAAGATTGGAAATCAGTTACTCCAGAAGATCGTTCTGCTCCACTTCCTAGTCAAGTTAGCACCAAAGATGGTTTGGGCTCTTCTGGCGAGTCTATTGAGAATGGTGACCTTTCGCATGACAATCGTCATACAATTAAAACTAGCCCAAAAATGAAGCTGCTATGGGAGCGTGCAATCGATTCAAACAAGGCATTGTTGCTAGATGAAATTGGTCTTGCTCCTGATGACCTTTTAGAGAAAGTTGAGGAGTTTGAGAGAATTTCACAAGCAACTGAGCATTCGTATCCAGCATTTTTCTTGTCAAGTGAAGATATCAGCAGCCCAGATGACAGCCCTGAAAGTCAGGATTACAGCGAAGCTTACTACAGCTCTGATTATGATGAAGAGGATCAGGAAGGAGACCTTTTTGATAATGTTGACCCGTCAGTCCCATTGGGATCATTACCTGTTGATATCATAGCAAAGAAGCTCAACCCTGAATAG 1683 46.11 MARIPSLPGLNLFSSLPSAPPPHDPSSSSSPSTPIPIPKYPPPKSRTLRTNPPKTPNPSPNPALKTFHRRSKYYKPVKDGVISSHGDRAVVIGESGVSYLLPDAPFEFQYSYSETPKAKPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPPPDTKGVKQVEMPGPFPLGKFPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHLEEKTGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKEEANELRMKGKNLLPICKLAKNGVYISLVNDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDSEQILMWRGKDWKSVTPEDRSAPLPSQVSTKDGLGSSGESIENGDLSHDNRHTIKTSPKMKLLWERAIDSNKALLLDEIGLAPDDLLEKVEEFERISQATEHSYPAFFLSSEDISSPDDSPESQDYSEAYYSSDYDEEDQEGDLFDNVDPSVPLGSLPVDIIAKKLNPE 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1316938 1321142 - Lag0039983.1 Lac13g0187 591343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0187 560 SMART CRS1_YhbY_2 198 281 IPR001890 GO:0003723(InterPro)
Lac13g0187 560 SMART CRS1_YhbY_2 316 399 IPR001890 GO:0003723(InterPro)
Lac13g0187 560 MobiDBLite consensus disorder prediction 522 536 - -
Lac13g0187 560 SUPERFAMILY YhbY-like 316 406 IPR035920 -
Lac13g0187 560 MobiDBLite consensus disorder prediction 1 70 - -
Lac13g0187 560 Gene3D - 197 293 IPR035920 -
Lac13g0187 560 MobiDBLite consensus disorder prediction 411 434 - -
Lac13g0187 560 MobiDBLite consensus disorder prediction 501 521 - -
Lac13g0187 560 MobiDBLite consensus disorder prediction 406 443 - -
Lac13g0187 560 FunFam CRS2-associated factor 1, chloroplastic 315 410 - -
Lac13g0187 560 ProSiteProfiles CRM domain profile. 196 292 IPR001890 GO:0003723(InterPro)
Lac13g0187 560 Pfam CRS1 / YhbY (CRM) domain 316 399 IPR001890 GO:0003723(InterPro)
Lac13g0187 560 Pfam CRS1 / YhbY (CRM) domain 198 281 IPR001890 GO:0003723(InterPro)
Lac13g0187 560 ProSiteProfiles CRM domain profile. 314 410 IPR001890 GO:0003723(InterPro)
Lac13g0187 560 MobiDBLite consensus disorder prediction 18 60 - -
Lac13g0187 560 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 43 557 IPR044599 GO:0000373(InterPro)
Lac13g0187 560 MobiDBLite consensus disorder prediction 501 542 - -
Lac13g0187 560 SUPERFAMILY YhbY-like 197 291 IPR035920 -
Lac13g0187 560 FunFam CRS2-associated factor 1, chloroplastic 197 292 - -
Lac13g0187 560 Gene3D - 316 412 IPR035920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0187 K27710 - - csv:101217796 942.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0187 Lac-Chr13:1316938 Lac6g3014 Lac-Chr6:47728278 3.70E-129 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g667 . . . . . Bpe10g00846 . Bma15g00177 . . . . . . Sed06g1652 . Cpe01g01543 Bhi07g01749 Tan04g1255 Cmetu10g0674 Lac13g0187 Hepe10g1626 . . Cla05g02555 Cam05g2743 Cec05g2775 Cco05g2815 Clacu05g2744 Cmu05g2596 Cre05g2711 . . . . Lsi04g00562 Csa05g02323 Chy10g00891 Cme10g00538 Blo06g00885 . . . . . . . . . . Cma04g01743 . Car04g01776 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008682 0 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35