Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0189 ATGAACCATCTCTTTGAACTACCTGAACAGATTTGTTATGTGCAGTGTGGAATTTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCAGCAGCTTGTCGATGGCGGTCACGGTGACGTGCGGCCACTGCTCAAGTCTCCTTTCTGTCAACATGATGAAAGCCACTCTGGTTCCTCTCCATTTTCTGTCTTCTCTTTCTCGCAATGTGCCCAGAGAAGCTTATGGAGAAATGCATTCAGGGAAGTTCTTTGACAGTTTCAAGAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGTGACACCTCCTGTTGTAAACAAACCTCCTCAGAAAAGACAGCGTGCCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCAAAATCCTCAAATGACTCACAAGGAGGCCTTCAGAACAGCAGCAAAAAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACACAGAGAGCTGTAATCAGATTGAGGAAAATGGGATTTGGAACACTCAGATTCCTGAGAACAGAAGTAATAACAAACAAAAGCAATGTTTGAAAATGCTCCTTTTCCAAAGCCAGTCAACTTCTCAAAGCTCACAAGGATGGAAAGTGTTTCCCAAGGCATTCAGTTTTGACATAACTCACCATTTCAGTGAAGCCATGGCTGAAGTGCTTTCAGATTTTTGCTCTGTTACTTCATTTAGGAACAATGGTTCAAAATTCCAATGGCTTAAAGAGGATAGATGCCATTGGGAATGA 792 42.17 MNHLFELPEQICYVQCGICTTILLVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPREAYGEMHSGKFFDSFKRSNLKFSEYEVEEGLIPVTPPVVNKPPQKRQRAPSAYNCFIKDEIRRLKAQNPQMTHKEAFRTAAKNWANFPPIQEKEDTESCNQIEENGIWNTQIPENRSNNKQKQCLKMLLFQSQSTSQSSQGWKVFPKAFSFDITHHFSEAMAEVLSDFCSVTSFRNNGSKFQWLKEDRCHWE 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1332243 1333948 + Lag0039985.1 Lac13g0189 591345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0189 263 PANTHER PROTEIN YABBY 6-RELATED 8 171 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
Lac13g0189 263 CDD HMG-box_SF 119 165 - -
Lac13g0189 263 FunFam Axial regulator YABBY 4 106 173 - -
Lac13g0189 263 Gene3D High mobility group box domain 109 199 IPR036910 -
Lac13g0189 263 Pfam YABBY protein 8 162 IPR006780 GO:0007275(InterPro)
Lac13g0189 263 SUPERFAMILY HMG-box 104 160 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0189 K25796 - - csv:101211641 350.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0189 Lac-Chr13:1332243 Lac3g0792 Lac-Chr3:6309430 1.10E-30 dispersed
Lac13g0189 Lac-Chr13:1332243 Lac6g1318 Lac-Chr6:13612793 2.70E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g669 . . . . . . . . . . . . . . . . Cpe01g01541 Bhi07g01746 . . Lac13g0189 Hepe10g1628 . . Cla05g02553 Cam05g2741 Cec05g2773 Cco05g2813 Clacu05g2742 Cmu05g2594 Cre05g2709 . . . . Lsi04g00561 Csa05g02325 Chy10g00892 Cme10g00537 . Blo11g00921 . . . . . . . . . Cma04g01741 Cma05g00022 Car04g01775 Car05g00019 . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac11g2250 . 78 235 C2C2-YABBY Transcription Factor Family AT2G45190 58.7 2.1e-43 172.9
Lac9g2746 . 1 167 C2C2-YABBY Transcription Factor Family AT1G08465 67.9 6.8e-56 214.5
Lac11g2250 . 34 225 C2C2-YABBY Transcription Factor Family AT1G08465 53.6 3.5e-44 175.6
Lac3g0792 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 56.2 8.7e-43 171.0
Lac11g2250 . 45 234 C2C2-YABBY Transcription Factor Family AT4G00180 54.8 5.8e-51 198.4
Lac13g0189 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.7 1.7e-39 160.6
Lac3g0792 . 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 1.8e-63 239.6
Lac6g2925 . 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.1 1.5e-62 236.5
Lac9g2746 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 60.9 2.5e-49 192.6
Lac11g2250 . 34 198 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 5.4e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012058 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23126 PF04690 YABBY 3.30E-57 CL0114 Lac TF