Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0189 ATGAACCATCTCTTTGAACTACCTGAACAGATTTGTTATGTGCAGTGTGGAATTTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCAGCAGCTTGTCGATGGCGGTCACGGTGACGTGCGGCCACTGCTCAAGTCTCCTTTCTGTCAACATGATGAAAGCCACTCTGGTTCCTCTCCATTTTCTGTCTTCTCTTTCTCGCAATGTGCCCAGAGAAGCTTATGGAGAAATGCATTCAGGGAAGTTCTTTGACAGTTTCAAGAGATCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGTGACACCTCCTGTTGTAAACAAACCTCCTCAGAAAAGACAGCGTGCCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCAAAATCCTCAAATGACTCACAAGGAGGCCTTCAGAACAGCAGCAAAAAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACACAGAGAGCTGTAATCAGATTGAGGAAAATGGGATTTGGAACACTCAGATTCCTGAGAACAGAAGTAATAACAAACAAAAGCAATGTTTGAAAATGCTCCTTTTCCAAAGCCAGTCAACTTCTCAAAGCTCACAAGGATGGAAAGTGTTTCCCAAGGCATTCAGTTTTGACATAACTCACCATTTCAGTGAAGCCATGGCTGAAGTGCTTTCAGATTTTTGCTCTGTTACTTCATTTAGGAACAATGGTTCAAAATTCCAATGGCTTAAAGAGGATAGATGCCATTGGGAATGA 792 42.17 MNHLFELPEQICYVQCGICTTILLVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPREAYGEMHSGKFFDSFKRSNLKFSEYEVEEGLIPVTPPVVNKPPQKRQRAPSAYNCFIKDEIRRLKAQNPQMTHKEAFRTAAKNWANFPPIQEKEDTESCNQIEENGIWNTQIPENRSNNKQKQCLKMLLFQSQSTSQSSQGWKVFPKAFSFDITHHFSEAMAEVLSDFCSVTSFRNNGSKFQWLKEDRCHWE 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1332243 1333948 + Lag0039985.1 Lac13g0189 591345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0189 263 PANTHER PROTEIN YABBY 6-RELATED 8 171 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
Lac13g0189 263 CDD HMG-box_SF 119 165 - -
Lac13g0189 263 FunFam Axial regulator YABBY 4 106 173 - -
Lac13g0189 263 Gene3D High mobility group box domain 109 199 IPR036910 -
Lac13g0189 263 Pfam YABBY protein 8 162 IPR006780 GO:0007275(InterPro)
Lac13g0189 263 SUPERFAMILY HMG-box 104 160 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0189 Lac-Chr13:1332243 Lac3g0792 Lac-Chr3:6309430 1.10E-30 dispersed
Lac13g0189 Lac-Chr13:1332243 Lac6g1318 Lac-Chr6:13612793 2.70E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23126 PF04690 YABBY 3.30E-57 CL0114 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0189 K25796 - csv:101211641 350.903