Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0191 ATGGGGTCTGAAGGTCCAGCTGGGGTTACTATTCATGTGACTGGATTTAAGAAGTTTCATGGAGTTGCTGAAAATCCTACCGAGGCGATCGTCAATGACCTGAAGGCTTTCGTAGAAGAAAGAGGGTTACCTGCTGGTGTTACTCTTGGAAGTTGTACAGTTCTTGATGCTGCTGGAGATGGTGCTCTTCCTGTGCTTCAAAAAGTTCTGGAATCTGGCATCTCAAATATGACAGAAACTAACAAAGTCATATGGCTTCACCTTGGAGTCAATAGTGGTTCAGTGAGGTTTGCTGTTGAGTGTCAAGCTGTGAACGAAGCTACTTTCCGCTATCCAGACGAACTCGGATGGCAGCCTCAGAAACTTCCTATAGCCTCTGAGGATGGGGAAATCTCAATAATTAGAAAGACATCCTGCTCGGCTATGGCGATTGTAGAGAGGTTGAAGACGAAAAGCTACAGCGTGATGTTATCGGAGGACGCGGGTCGTTTTGTTTGCAATTATGTATATTACCACTCCCTCAGATTTGCAGAACAGAAGGGTCACAAATCATTGTTTGTCCATGTTCCACTGTTTTCAAAAATCGACAAAGAAACCCAGATGCGTTTCGTTCACTCACTCTTAGAGGCCATTGCGTCTACATGTTAA 648 44.6 MGSEGPAGVTIHVTGFKKFHGVAENPTEAIVNDLKAFVEERGLPAGVTLGSCTVLDAAGDGALPVLQKVLESGISNMTETNKVIWLHLGVNSGSVRFAVECQAVNEATFRYPDELGWQPQKLPIASEDGEISIIRKTSCSAMAIVERLKTKSYSVMLSEDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSKIDKETQMRFVHSLLEAIASTC 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1339768 1341170 + Lag0039987.1 Lac13g0191 591347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0191 215 CDD Peptidase_C15 9 213 IPR000816 GO:0005829(InterPro)|GO:0006508(InterPro)|GO:0016920(InterPro)
Lac13g0191 215 SUPERFAMILY Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 10 212 IPR036440 -
Lac13g0191 215 FunFam Pyrrolidone-carboxylate peptidase isoform A 8 214 - -
Lac13g0191 215 PANTHER PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED 9 214 IPR016125 -
Lac13g0191 215 Gene3D - 9 215 IPR036440 -
Lac13g0191 215 Pfam Pyroglutamyl peptidase 11 194 IPR016125 -
Lac13g0191 215 PIRSF Pyrrolidone-crbxlat_pptds 8 215 IPR000816 GO:0005829(InterPro)|GO:0006508(InterPro)|GO:0016920(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0191 K01304 - - csv:105435561 398.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0191 Lac-Chr13:1339768 Lac3g3047 Lac-Chr3:48759815 1.60E-77 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g675 . . . Bda11g01271 Bpe13g01468 . . . . . . . . Car18g00722 . Cpe09g00509 Cpe01g01538 Bhi07g01742 . . Lac13g0191 Hepe10g1630 . . Cla05g02550 . . Cco05g2810 . . . . . Cone8ag0673 . . Csa05g02328 Chy10g00895 Cme10g00532 . . . Bda11g01271 . . Bma01g00045 . . . . Cma04g01740 Cma05g00017 Car04g01773 Car05g00015 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002246 3 3 2 4 3 1 1 1 1 1 2 1 2 2 2 3 1 5 3 1 2 2 2 2 2 1 2 4 2 2 63