Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0200 ATGAGGTCTTCTTCAAACGATACTTCTTCTTCTTCATCGGATTCTGATTCTGGTGCAGATTCAAGTTTGCCGCCTGAAGCTTCGGATTCTTCTCCTCCTTCTCCTCCGTCGCAGGATGATTTTTCAACATTGTCATTTGATGAAGGCAATGAAGCCAATGGTCCTGAGCCGTCGGATCTTGCATCGCAATTTAATTCTCCGCCTGCCGAGAGCGATGGTTCACCGTCTTCCTCACCGCCATCTACTCCAAACCCTGGATCTACACCGCCGGCTCCTATTGTCTCCTCCAATTCAAGTTCATCCGAAGAGAATCCATCGCCTCCGCCTGAACCTTCCGCTTCACCACCGCCGTCTCCTCATCCTCCTCCGCCGCCGACTCGTCCACCACCGACTTCACCACCGCCTCCAGAACTGCCGTCTGAGTTTGAAGTCGATCCTCCACCTTCCCCTGTTCCGACCCAAAAAAACTCTCCGGCAACTCCAGGAAGTCCGCCTTCTCCAATACCTGACAATAGTCCCTCTGTTCCGACGAATAACGGCAGTCCTCCGGGACCTGGGACCGACGAGGAGCTTCCACCATCTGAACCAACGGATCCTCTTTCTCCAACAGAAGCTCCAATCGTGGTTCCTTCACCAGGTGCAAGTCCGGGGACGGCGAGACGAACTCCGAGTCCACCTGAGGGGTTAACCACTCCAACATCAGGGTCTAATGTTCTTCCACCTCCCACAACTACATCCTCCAGTCGTACTCCAAACAATTCACCTCAATCTACCGACTCAACGCCGGTGAAATCACCATCAGGGAAGTCCAACCCACCATCGTCAGGTTCAAGTAGTCACACTGATGTCATAATAGGCGCTGCAGTAGCTGGAGTTTTCGTAATCGTTTTGATCGCTGCGTTTTTTGTGTTAACAAGGAAGAAGAAAAGACGGACAGATATGTACCCTGGCCCGTACTTGCCTCCCAATAACTTCGTTGTTAAATCAGATGGAAATTACTATCCGCATCAACATACGGGCAACTCTTCTAGTTCGGCAGAAGGCTTCTATACTCAGGTCCCGCATACTCCGGTTGGAAATAGCTTTGGGAGTCAAAGAGGGACGGGATACAGTGGCAGTGGCGGCGCCAGTGCAGCGGAGTCAGGTGTGATAAACAGTGCTAAATTCTTCTTTACCTATGAGGAATTGATGGAGGTTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTGGCTTCCAGAAGGGAAGCCAGTGGCTGTCAAGCAACTCAAGGCAGGAAGTGGACAGGGCGAGAGGGAATTCAAGGCGGAAGTTGAGATTATCAGTCGTGTTCATCATCGGCATTTGGTGTCTTTAGTGGGCTACTGCGTCTCTGAGAATCATAGATTGCTCATCTATGAGTTTGTTCCTAACAAGACTCTTGAGTATCATCTCCATAGCGGTAATGAAGTGCCCGTGTTGGATTGGAGCAAAAGACTCAAAATCGCTTTAGGAGCTGCAAAGGGTTTGGCATATCTGCATGAAGATTGCCATCCCAGGATCATTCACAGAGATATCAAGTCAGCTAACATTTTGCTGGATGATGCTTTTGAGGCACAGGTTGCAGATTTTGGACTTGCAAAACTGACTAACGATACAAAAACCCACGTTTCGACTCGTGTCATGGGGACATTTGGATACATGGCACCTGAGTACGCATCAAGTGGGAAGTTGACAGATAGATCAGATGTATTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATCACTGGTCGTAAGCCTGTTGATCCCACTCAGCCTTTGGGGGATGAGAGTTTGGTCGAATGGGCTCGTCCACTCCTTCTTCACGCCCTTGAAACTGGGGAGTTTGAAGTATTGATAGATCCACGCCTTGAAAAACGGTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGCGTTCGTCATTCGGCTCCCAAAAGGCCTCGCATGGTTCAGGTAGTGAGAGCACTAGACATTGAAGGCGACATTTCTGACCTCTCCAATGGTGTCAAATTTGGTCAGAGCACTATCTATGATTCTGGACAATACAGTCAAGACATTTCTAAGTTCAGGAGAATGGCATTCGGTGATAGCTCCGAGTACGACATTTACAGTAGCGAATACAATTCCAGAGAGATGTCTGCAAGTCGTGAATCATGGAGATCAAATAACTCAAGTGGTGAATCAGAAACTACAGCTTTTAAAGGACGAAGTGGTGTACAACAAAGTCACCTTAACAGTCGACAATTATAA 2313 48.55 MRSSSNDTSSSSSDSDSGADSSLPPEASDSSPPSPPSQDDFSTLSFDEGNEANGPEPSDLASQFNSPPAESDGSPSSSPPSTPNPGSTPPAPIVSSNSSSSEENPSPPPEPSASPPPSPHPPPPPTRPPPTSPPPPELPSEFEVDPPPSPVPTQKNSPATPGSPPSPIPDNSPSVPTNNGSPPGPGTDEELPPSEPTDPLSPTEAPIVVPSPGASPGTARRTPSPPEGLTTPTSGSNVLPPPTTTSSSRTPNNSPQSTDSTPVKSPSGKSNPPSSGSSSHTDVIIGAAVAGVFVIVLIAAFFVLTRKKKRRTDMYPGPYLPPNNFVVKSDGNYYPHQHTGNSSSSAEGFYTQVPHTPVGNSFGSQRGTGYSGSGGASAAESGVINSAKFFFTYEELMEVTSGFSRQNILGEGGFGCVYQGWLPEGKPVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSENHRLLIYEFVPNKTLEYHLHSGNEVPVLDWSKRLKIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDDAFEAQVADFGLAKLTNDTKTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPLLLHALETGEFEVLIDPRLEKRYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRALDIEGDISDLSNGVKFGQSTIYDSGQYSQDISKFRRMAFGDSSEYDIYSSEYNSREMSASRESWRSNNSSGESETTAFKGRSGVQQSHLNSRQL 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1385928 1388963 - Lag0039996.1 Lac13g0200 591356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0200 770 MobiDBLite consensus disorder prediction 733 770 - -
Lac13g0200 770 ProSiteProfiles Protein kinase domain profile. 403 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0200 770 MobiDBLite consensus disorder prediction 1 280 - -
Lac13g0200 770 MobiDBLite consensus disorder prediction 1 49 - -
Lac13g0200 770 Gene3D Phosphorylase Kinase; domain 1 373 478 - -
Lac13g0200 770 CDD STKc_IRAK 409 678 - -
Lac13g0200 770 Pfam Protein tyrosine and serine/threonine kinase 406 676 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0200 770 FunFam proline-rich receptor-like protein kinase PERK8 479 692 - -
Lac13g0200 770 MobiDBLite consensus disorder prediction 104 206 - -
Lac13g0200 770 Gene3D Transferase(Phosphotransferase) domain 1 479 687 - -
Lac13g0200 770 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0200 770 MobiDBLite consensus disorder prediction 56 77 - -
Lac13g0200 770 FunFam Proline-rich receptor-like protein kinase PERK8 376 478 - -
Lac13g0200 770 MobiDBLite consensus disorder prediction 224 280 - -
Lac13g0200 770 SUPERFAMILY Protein kinase-like (PK-like) 384 677 IPR011009 -
Lac13g0200 770 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 241 713 IPR047117 -
Lac13g0200 770 SMART serkin_6 403 677 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0200 770 ProSitePatterns Protein kinases ATP-binding region signature. 409 431 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0200 Lac-Chr13:1385928 Lac8g2805 Lac-Chr8:45266396 1.50E-141 dispersed
Lac8g1760 Lac-Chr8:35824029 Lac13g0200 Lac-Chr13:1385928 3.20E-63 dispersed
Lac13g0200 Lac-Chr13:1385928 Lac6g2998 Lac-Chr6:47585561 3.20E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85842 PF07714 PK_Tyr_Ser-Thr 2.30E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0200 - - - 0.0