Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0206 ATGGCCGACTCTTCATCTTCCCCTGCAACCCTCGATTCAAATCCTCAAGTTGCCGAGCCCGAAAACCCCAATTCCCAGCCCAAAAAACCCGAATCTGCCGCTTCTTCGTTTCCTCCACCGCAATCCTTACCACCAGCATCGCTTTCTGTCGGAATAAACCCTACCTTGCATTCACTCTTAGTGTCAACGCCGCAACCGCCTCTTTCTCTATCGTATGCCGCGCCGCCCTTATCCGGTACAGTGGCCGTTCCTCCGACGGCTCCGTCTTTTCGCCCGGTGCCTCTCGCAACTCATCAGTTCTCGCCCATGCCCGGCACTGGCATGCTGAACCCAAGCTATCCAAACCCTGGGGTTCAGCCTCCCGGTGTTAGCTCGGTTGCGGCGCCTGCTCCTGGTATGGCAAGTGGCGGTGCGGGAGCAGTTCCAGTTCCAGTGCCACAACCGATGATGGCTTATCAAGTTCCACCGGGTCAGGTTCCGAATCCGGCGATGAGGCCGTACGCCACTATGCCAAATGGTTTCGCAGCTGCTGCTCCTCAAGGAGCCTTTCCTCCCCCTGGAGTTCCTCGTTTTCCTTCTCCATATCCTGCTATGATTCGGACGCCTTTTCCTCCACGGCCGCCTGGTTCTATGGGCATGGTTCCAGCAATGCCACGACCTCCTGTTCCAGGAATGCCTGGTGTACGTCCAATCATGCCTCCTGTGGTTAGGCCTGCTGTTCTCCCAAGTGTTACACCTGCAGAAGAACCACAAACTACAGTTTATATTGGCCGCATTGCACAATCAGTGGAAAATGATTTCATGCTGTCCCTTCTTCAGCTGTGTGGACCAGTGAAGAGTTGGAAACGGGCCCAAGATCCTACGGATGGAACTCCTAGAACTTTTGGATTCTGCGAGTTTGAGTCTGCTGAAGGTGTTCTACGTGCTCTACGATTACTGACAAAGTTAAACATTGATGGACAGGAACTAGCGCTGAAAGGAACTCAAGCAACGAGAGATTATCTAAAGCGTTATGTTGAAAAGAAAGCAGAGAATTCAAAGAAATTGAAAGAAACACAAGTTTCAGAGACTAAGGAAGAAGAAGCAGATACATCGAATGTGGCTAAAAATGAAACTTCAAAGCCCCCTTCAGAGGATTCAAAGGAGGATCATGATTCAGGGAAAAAAGAAGATCATGACATTGCTTGTTCTGCAGTTTTAAGTGATGAAGATAGAGAGGCTGATCGAGAGGCATTGGAAAAGCTTACAAATGCACTGGAGGAGAGGTTGAAGTCTAGACCTCTGCCACCACCTCCTCTACTGCCAACTGCTGATGTCTCTGGTAATTCAAGTGCAGAACCATCTTCTAAATTGAAAGATGGTGAATCTGATGCTGATATTTTGAAAAGCGATGCAGCTGATGATAGAAATGATGATGAAACAACTAGTGACAATAAACAAACTAGTGAGCATGATAAGCCTGAAACAAGCTCACCAGACAGAAGTAGGAGGTATGACAGGAGGAGTCGAGAAAGAGATAGGGAGCGGGATCTGAAAAGGGAGAAGGAGCGGGAAATCGAGAGATATGAAAGAGAGACAGAGCGGGAGCGAGCTAGGAAAGAGAGGGAACAAAGAAGAAAGTTTGAGGAGGCTGAGCGACAGTATGAAGAATGTCTTAAAGAGTGGGAATATCGAGAAAGAGAGAGAGAAAAGCAGAGGCAGTATGAGAAAGAGAGGGAGAAAGAGAAAGAGCGTAAAAGGAAGAAAGAAATATTGTATGATGAAGATGATGAGGATGACGATTCAAGAAGAAAATGGCGTAGAGGTGCTCTGGAGGAAAAGAGGAAGAAGAGGTCTAGAGAAAAGGAAGATGATTCGATTGACAGACAGAGAGAGGAAGAAGAAATTGCTGAGGCCAAGAGGAAGGCTGAGGAGGAGCAGCTGCAGAAACAGAAAGATCCGCTGAAACTTCTATCTGGTCAAATGATGAGTGTCAACGAGAAAACTGTTCTTGCTGAAGAATCTGCTAATGAGATTAAAGTTATGGCTTCCGAACGTGATTCTGAGATCGACTCTAGCTGTGAGAACCATATAGGGGATGGGGTCCTACAAAACGGTAGTGGTGATGAATTAAATACGATACCATCAGAGACCCGACAGAGTGGAGGCTTGCCTGCAAAAAGGTTAGGATTTGGTTTAGTAGGATCTGGAAAACGGACTGCTGTACCTTCAGTTTTTCATGAGGAGGAGGATGATGAAGCACAGAAAGAGAAGAAGATGAGGCCACTGGTTCCAATTGATTACTCAGCTGAGGAACTCCAGGCTGTGCAACCTTCCAGTACTGGGGCTTTGCCGCCAAATTTAGTTGCAGCGGCCGAGTTTGCAAAACGTATATCAAATGTTAATTCCAAAGAAGAGAAGCCTGACAGTGAAAGGGAGCGAGGAAGGCGTTCCAGTGAAAAGTCTAGTCAGCGGGATAGAGACCGGAATGATGAGGATACCTATCGCAGCAAAGATGAGAACAAGACAATAGACAGAGATAGGGAGCGAGATCATGTTTTGGATAAAGTGAAAACACCAGATAACAAAAAGCTTTTGGATGCAAAACAGTTGATTGATATGATTCCGAAGACAAAGGAGGAGTTATTCTCATATGACATTAATTGGGCTATTTATGAAAAGCATGCACTACATGAGAGAATGAGACCGTGGATTTCAAAAAAGATAACAGAGTTTTTGGGGGAGGAGGAAACCACTCTTGTCGATTACATTGTTTCAAGTACTCAGGAACACGTAAAGGCATCTCAAATGCTGGAGCTACTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGAATGCTTATCTTCGAAATAAAAAAGGTAGAGACTGGTCTAGCTTTTAGATCAAAAGCATGA 2913 46.24 MADSSSSPATLDSNPQVAEPENPNSQPKKPESAASSFPPPQSLPPASLSVGINPTLHSLLVSTPQPPLSLSYAAPPLSGTVAVPPTAPSFRPVPLATHQFSPMPGTGMLNPSYPNPGVQPPGVSSVAAPAPGMASGGAGAVPVPVPQPMMAYQVPPGQVPNPAMRPYATMPNGFAAAAPQGAFPPPGVPRFPSPYPAMIRTPFPPRPPGSMGMVPAMPRPPVPGMPGVRPIMPPVVRPAVLPSVTPAEEPQTTVYIGRIAQSVENDFMLSLLQLCGPVKSWKRAQDPTDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELALKGTQATRDYLKRYVEKKAENSKKLKETQVSETKEEEADTSNVAKNETSKPPSEDSKEDHDSGKKEDHDIACSAVLSDEDREADREALEKLTNALEERLKSRPLPPPPLLPTADVSGNSSAEPSSKLKDGESDADILKSDAADDRNDDETTSDNKQTSEHDKPETSSPDRSRRYDRRSRERDRERDLKREKEREIERYERETERERARKEREQRRKFEEAERQYEECLKEWEYREREREKQRQYEKEREKEKERKRKKEILYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSIDRQREEEEIAEAKRKAEEEQLQKQKDPLKLLSGQMMSVNEKTVLAEESANEIKVMASERDSEIDSSCENHIGDGVLQNGSGDELNTIPSETRQSGGLPAKRLGFGLVGSGKRTAVPSVFHEEEDDEAQKEKKMRPLVPIDYSAEELQAVQPSSTGALPPNLVAAAEFAKRISNVNSKEEKPDSERERGRRSSEKSSQRDRDRNDEDTYRSKDENKTIDRDRERDHVLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYDINWAIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLAFRSKA 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1424828 1430654 + Lag0040002.1 Lac13g0206 591362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0206 970 SMART rrm1_1 253 326 IPR000504 GO:0003723(InterPro)
Lac13g0206 970 CDD UDM1_RNF168 595 652 - -
Lac13g0206 970 Coils Coil 340 360 - -
Lac13g0206 970 MobiDBLite consensus disorder prediction 558 653 - -
Lac13g0206 970 MobiDBLite consensus disorder prediction 793 848 - -
Lac13g0206 970 MobiDBLite consensus disorder prediction 345 367 - -
Lac13g0206 970 SUPERFAMILY RNA-binding domain, RBD 208 323 IPR035979 GO:0003676(InterPro)
Lac13g0206 970 MobiDBLite consensus disorder prediction 374 421 - -
Lac13g0206 970 SUPERFAMILY PWI domain 891 958 IPR036483 -
Lac13g0206 970 Coils Coil 558 585 - -
Lac13g0206 970 CDD RRM_RBM25 252 335 IPR034268 -
Lac13g0206 970 Coils Coil 613 642 - -
Lac13g0206 970 MobiDBLite consensus disorder prediction 1 49 - -
Lac13g0206 970 Gene3D - 245 367 IPR012677 -
Lac13g0206 970 SMART pwi_2 886 959 IPR002483 -
Lac13g0206 970 FunFam RNA Binding Motif protein homolog 849 965 - -
Lac13g0206 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 337 IPR000504 GO:0003723(InterPro)
Lac13g0206 970 Gene3D PWI domain 849 965 - -
Lac13g0206 970 MobiDBLite consensus disorder prediction 345 546 - -
Lac13g0206 970 ProSiteProfiles PWI domain profile. 873 970 IPR002483 -
Lac13g0206 970 MobiDBLite consensus disorder prediction 699 713 - -
Lac13g0206 970 Pfam RNA recognition motif 254 323 IPR000504 GO:0003723(InterPro)
Lac13g0206 970 MobiDBLite consensus disorder prediction 675 728 - -
Lac13g0206 970 MobiDBLite consensus disorder prediction 450 546 - -
Lac13g0206 970 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 970 IPR053294 -
Lac13g0206 970 MobiDBLite consensus disorder prediction 93 121 - -
Lac13g0206 970 MobiDBLite consensus disorder prediction 558 645 - -
Lac13g0206 970 Pfam PWI domain 893 956 IPR002483 -
Lac13g0206 970 MobiDBLite consensus disorder prediction 1 32 - -
Lac13g0206 970 Coils Coil 505 554 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0206 K12822 - - csv:101214372 1097.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47