Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0211 ATGACTCAAAAATCAAAGGACTCGGGTCGCCGGATTCTGTCGCTACCGGCGATTCAACCCTGCGAATGCACTTCGCCGGCGACGCTGTTGACGTCGTTGATCAATGTCAGTCGCGACATTTGTGGCTACAGATCGAAGTTCTTCGGCAGCAACAAGCGAAACGCCAACGAATCGATTCGCCAAATCGGAATCCTTCGAACGTTCTTCGAAGAAATTCAAGATCGGAAACCAAACGACCTTCCGGATTCCGTCGCTTTAGTCTTGTCGGAGCTTCATTTGATCTTCCAGAAGGTCCGGCATCTCTTGGAGGATTGTGCCCTAGAAGGCGCTCGTTTGTTGATGCTCATGAAATCGGAACTCGTCGCGAATCGCTTCCGTGTCTTGATCCGATCCGTCGCGTTGGCTCTGGAAGTTTTGCGTTTCGATTCGATCGATGTGCCGATCGAAGTTGTGGAGCATGTGGAATTAGTGATGAAACATTCCCGAAGGGCGAAGTTCGAAGTCGATCGCGAAGATGAAGAGATTCTCAACGAGGTAAGATTAATTTTGACTCTATTTGATGTCGGCGTTTCTCCGGATAATACTCAAATCATACGTGTTCTTGATCATATCGGGATTAAGAAGTGGAGTTCGTGCAATAAGGAAGTGAAATTCTTGGATTCGGAAATCGAACTCGAATGGTCGTCTCAGGATAAAAGAGAGCTTTCTTTTTTAAGCAACTTAATGGGTTTGATGAGCTACTCTCGCTGCATATTATTCGATGCTGTCGATTGCGAAGCGGTTCGATTTGTCGATCAATGCAGAACAGAAGTTCTTGATTGTTTAAACCCAGATGATTTTCGATGCCCAATCTCGTTGGATTTCATGATTGATCCAGTGACAGTTGCGACAGGGCATACTTACGATCGATCTTCGATTCAAAGGTGGCTGAGGGCTGGAAATTCCATCTGTCCCAATACAGGGGAAAGATTGAAGAACAGAGACCTAGTCCCGAATTTGGCTCTTCGTCGGATAATTCGCCAGTACTGTTCTGAAAATTCAATCCCGTTTGGAGAATCAAGCAAACAGAAACGGAACATAACGAGGACGGTTGCTGCTGGTTCTTCAACAGCCGAGAAGATTGCTGGGGTTTTGGCGAAATTTTTAGCTCGCCTCCTCGAATCAGGAACGGTGGACGAGAAGAACAGGGCAGCTTTTGAGATCAAGCTTCTATCCAAAGCAAGCATTTTTAATCGTTCTTGTTTGGTGGAAATTGGTCTGATTCCAAATTTACTCAAGCTGTTGAGTTCATCAGATGTTTTAACGCAGAAGAACGCCATTGCAGCCGTGTTGAACCTCGCGAAGCATTCGAAAAGCAAGAGAGTGATAGCGGAAAACATGGGATTGGAACAAATTGTCGATGTTTTGAGAACGGGCTACAGAATTGAAGCTCGACAACTTGCTGCTGGTGCTCTGTTTTACATGGCTTCCATTGAAGAGTACAGAAAGCTCATTGGGGAAATCCCAGAAGCACTTCCAGGGTTGATGGATTTGCTCAAGGACGAAGCAGATCGCAGCAAAAAGAACGCAATGGTTGCGCTATATGGGCTTCTTATGCACCCGGAAAACCACCGGAAAGTGCTTTCCGCCGGAGCAGTTCCTTTGTTGGTCAATCTGCTGGAAACATCCGACAGGGAAAGTCTCATTGCAGATTCAATGGAGATTCTTGCATCTCTGGCAGAGAAGCCCGATGGAACCGTAGCGATTTTGCGATGTGGGGCTTTGAATTCAATCATGGGGTTTTTAGATTCGTGCAGTTCAAAAGCTGGACAAGAGTACTCTGTTGCTTTACTGGTTGCTCTGTCCATCAATGGCGGATCTGAAGTAACTAGCATCATTGCAAAGAGTCCAACTCTAATTCCATCGCTGTACAATCTTCTCAGCGAAGGCACAAATCGAGCGAGCAGGAAGGCGAGTTCTTTGATCAAAGTCCTCCATGAATACTGTGAATTAGTGTCTTCAAGCTCTGATCCAATTGATCTTCGACAAGGACGAACAGTTGAAGCTTGGTAA 2052 46.0 MTQKSKDSGRRILSLPAIQPCECTSPATLLTSLINVSRDICGYRSKFFGSNKRNANESIRQIGILRTFFEEIQDRKPNDLPDSVALVLSELHLIFQKVRHLLEDCALEGARLLMLMKSELVANRFRVLIRSVALALEVLRFDSIDVPIEVVEHVELVMKHSRRAKFEVDREDEEILNEVRLILTLFDVGVSPDNTQIIRVLDHIGIKKWSSCNKEVKFLDSEIELEWSSQDKRELSFLSNLMGLMSYSRCILFDAVDCEAVRFVDQCRTEVLDCLNPDDFRCPISLDFMIDPVTVATGHTYDRSSIQRWLRAGNSICPNTGERLKNRDLVPNLALRRIIRQYCSENSIPFGESSKQKRNITRTVAAGSSTAEKIAGVLAKFLARLLESGTVDEKNRAAFEIKLLSKASIFNRSCLVEIGLIPNLLKLLSSSDVLTQKNAIAAVLNLAKHSKSKRVIAENMGLEQIVDVLRTGYRIEARQLAAGALFYMASIEEYRKLIGEIPEALPGLMDLLKDEADRSKKNAMVALYGLLMHPENHRKVLSAGAVPLLVNLLETSDRESLIADSMEILASLAEKPDGTVAILRCGALNSIMGFLDSCSSKAGQEYSVALLVALSINGGSEVTSIIAKSPTLIPSLYNLLSEGTNRASRKASSLIKVLHEYCELVSSSSDPIDLRQGRTVEAW 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1500582 1502633 - Lag0040007.1 Lac13g0211 591367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0211 683 Gene3D - 353 670 IPR011989 -
Lac13g0211 683 FunFam RING-type E3 ubiquitin transferase 276 348 - -
Lac13g0211 683 CDD RING-Ubox_PUB 277 329 IPR045210 -
Lac13g0211 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515(InterPro)
Lac13g0211 683 Pfam U-box domain 277 347 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g0211 683 SUPERFAMILY ARM repeat 380 658 IPR016024 -
Lac13g0211 683 SUPERFAMILY RING/U-box 277 349 - -
Lac13g0211 683 SMART Ubox_2 279 342 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g0211 683 PANTHER U BOX DOMAIN-CONTAINING 50 659 - -
Lac13g0211 683 SMART arm_5 533 574 IPR000225 GO:0005515(InterPro)
Lac13g0211 683 SMART arm_5 407 448 IPR000225 GO:0005515(InterPro)
Lac13g0211 683 SMART arm_5 449 490 IPR000225 GO:0005515(InterPro)
Lac13g0211 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 587 IPR000225 GO:0005515(InterPro)
Lac13g0211 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 349 IPR013083 -
Lac13g0211 683 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0211 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0211 Lac-Chr13:1500582 Lac8g2874 Lac-Chr8:45883322 7.10E-66 dispersed
Lac1g1790 Lac-Chr1:39414949 Lac13g0211 Lac-Chr13:1500582 8.20E-78 transposed
Lac1g3266 Lac-Chr1:52505518 Lac13g0211 Lac-Chr13:1500582 4.20E-33 transposed
Lac10g0433 Lac-Chr10:3391066 Lac13g0211 Lac-Chr13:1500582 5.20E-186 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g734 . . . . . . . Bma15g00190 . . . . . . Sed06g1631 . Cpe01g01524 Bhi07g01714 Tan04g1218 Cmetu10g0188 Lac13g0211 Hepe10g1648 . . Cla05g02532 Cam05g2722 Cec05g2753 Cco05g2794 Clacu05g2724 Cmu05g2578 Cre05g2692 Cone2ag0897 . . . Lsi04g00538 Csa05g02344 Chy10g00911 Cme10g00515 Blo06g00872 . . . . . . . . . . Cma04g01724 . Car04g01755 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002583 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 3 2 1 59