Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0217 ATGGATCTGGAAAGTGGGATTGATAGTGAAAAGAATGCGAAGAAAGACTCATGGAAGACGGTTTTGATGATGGCTTATCAGAGCCTTGGCGTTGTCTATGGAGAGTTGGGGACTTCGCCTCTTTATGTCTATAAGAACACTTTTGCAGAAGAAGATATCCATCACACGAAGAGCAACGACGAGATTTATGGCGTTTTGTCCTTTGTTTTCTGGACTCTCACCATTGTTCCTCTGCTCAAGTACATATTTATCGTCCTTAAAGCCGATGATAATGGCGAGGGAGGGACATTTGCTCTGTATTCGTTACTGTGTCGACACGCCCGAGTTAGCTCATTGCCCAATACCCAGTTGGCTGATTCTGAACTCACTGAGTACAAGATGGATGTCCTTGGTCCGCCATCTCAAGAAAGTTTTGGATTCAAACTCAAATCAGCCTTAGAAAAGCGTCGGGTTCTGCAAAAATTCTTGCTCGTTCTTGCTTTAATTGGGACTTGCATGGTGATAGGGGATGGCATCTTGACACCGGCTATTTCTGTTCTTTCGGCGGTTTCTGGCCTCGAGCATACCATGGCGAAAGAATATCATCAATATATAGTAATCCCAATTTCATGCATTGTACTGATAGCCTTGTTTGCTCTTCAACACTACGGCACTCACAGGATTGGCTTCTTGTTTGCGCCCATTGTGACACTGTGGCTATTGTGTATCAGTGCCATTGGCTTGTACAATATTCTTCACTGGAATCCTGGAGTTTATAGAGCGATTTCTCCTCGTTACATGTTCCAATTTCTTAAGAAAACACAAAAGGGAGGTTGGATGTCACTTGGTGGAATTATGTTGTGCATTACTGGATCAGAGGCGATGTTTGCTGACCTTGGGCACTTTTCACAGTTGTCAATTAAGATTGCTTTCAGTTTTATGGTTTATCCGTCCCTCCTACTAGCATACATGGGGCAAGCTGCCTACCTATCTCAAAATTATACCACTCCAAATGATCATCAAATTGGGTTTTATGTATCTGTACCTGAGAAATTGAGGTGGCCTGTCCTTATAATTGCTGTGCTTGCTGCCGTAGTAGGAAGCCAGGCTATAATCACTGGAACTTTCTCGATTATAAAGCAGTGCTCTGCTTTGGGTTGCTTTCCTCGAGTCAAAATCGTCCATACATCCTCAAAAGTTCACGGTCAGATCTATATCCCGGAGATTAATTGGCTTTTGATGCTATTGTGCTTGGCTGTTACCCTAGGTTTCAGGGACACGAAGCGCTTGGGTCATGCCTCAGGTTTGGCAGTAATCACTGTCATGCTCGTTACTACGTGCTTAATGTCTCTCGTTATCGTCCTGTGCTGGCACCGAAGTGTATTTCTTGCAATAGGCTTCATCTTCTTCTTTGGCACCATTGAATCTCTCTACTTCTCAGCTTCTCTTATCAAGTTTCTTGAAGGAGCTTGGGTTCCTATCGTAATTGCTTTTGTATTCCTGATAGTTATGTATGTCTGGCACTATGGTACTCTTAAGAAGTTTGAATTTGACATCCAAAACAAGGTTTCTATTAACTGGCTACTTAGTTTGGGTCCCAGCCTGGGCATTGTAAGAGTCCGTGGGATTGGCGTCATACAGACGGAGCTTGTTTCGGGAATCCCGGGTATCTTCACCCACTTTGTCACCAATATTCCTGCCTTCCATCAAGTTCTTGTTTTCCTTTGCATCAAATATGTCCAGGTGCCACATGTTAGACCGGAGGAACGGTTTCTAATTGGTCGTATTGGTACGAGTGAATATAGACTCTATCGGTGCATTGTGCGGTATGGGTATCGAGATGTTCACAAAGACGATGTAGAGTTTGAGAATGATCTTATATGCAGCATAGCAGAGTTTATAAGGTCAGGGAGTGCAGAGTCTAGTGATTCCAAACAGGGCTTTGATAAAGATGGTGAAAAGATGACAGTTGTTGGGACATCTTCTTCTCATGAAGATAGAATTCAAATGGCTGAGACCGATAACTATGAAGACTCTGAAGAATTGTACAGAGCTTCGGATACAAGGGAAATAAGGTCACCGGCTCCAGTTCAAGTGAGAAAAAGAGTCCGCTTCATCGTACCCGAGAGCCCGAAAATCAACACGGATGCAAGGGCAGAACTACAAGAACTAATGGAGGCAAGAGAAGGAGGTGTAGCTTACATATTAGGACGGTCACATATGAAAGCAAAACAAGGATCAAGCATGCTGAAAAGGGTGTCGATCGACTACATTTATGAGTTCTTGAGGAAGAACAGCAGAGAAGCTAACTACCCTGTAGGTTTATCACAGTCATCATCAACCCTCGAGGTGGGTATGATGTATCTTGTTTAG 2352 43.49 MDLESGIDSEKNAKKDSWKTVLMMAYQSLGVVYGELGTSPLYVYKNTFAEEDIHHTKSNDEIYGVLSFVFWTLTIVPLLKYIFIVLKADDNGEGGTFALYSLLCRHARVSSLPNTQLADSELTEYKMDVLGPPSQESFGFKLKSALEKRRVLQKFLLVLALIGTCMVIGDGILTPAISVLSAVSGLEHTMAKEYHQYIVIPISCIVLIALFALQHYGTHRIGFLFAPIVTLWLLCISAIGLYNILHWNPGVYRAISPRYMFQFLKKTQKGGWMSLGGIMLCITGSEAMFADLGHFSQLSIKIAFSFMVYPSLLLAYMGQAAYLSQNYTTPNDHQIGFYVSVPEKLRWPVLIIAVLAAVVGSQAIITGTFSIIKQCSALGCFPRVKIVHTSSKVHGQIYIPEINWLLMLLCLAVTLGFRDTKRLGHASGLAVITVMLVTTCLMSLVIVLCWHRSVFLAIGFIFFFGTIESLYFSASLIKFLEGAWVPIVIAFVFLIVMYVWHYGTLKKFEFDIQNKVSINWLLSLGPSLGIVRVRGIGVIQTELVSGIPGIFTHFVTNIPAFHQVLVFLCIKYVQVPHVRPEERFLIGRIGTSEYRLYRCIVRYGYRDVHKDDVEFENDLICSIAEFIRSGSAESSDSKQGFDKDGEKMTVVGTSSSHEDRIQMAETDNYEDSEELYRASDTREIRSPAPVQVRKRVRFIVPESPKINTDARAELQELMEAREGGVAYILGRSHMKAKQGSSMLKRVSIDYIYEFLRKNSREANYPVGLSQSSSTLEVGMMYLV 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1540578 1545693 + Lag0040013.1 Lac13g0217 591373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0217 783 Pfam K+ potassium transporter integral membrane domain 25 522 IPR053951 -
Lac13g0217 783 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 12 782 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lac13g0217 783 NCBIfam potassium uptake protein 24 781 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lac13g0217 783 MobiDBLite consensus disorder prediction 633 658 - -
Lac13g0217 783 Pfam K+ potassium transporter C-terminal domain 535 779 IPR053952 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0217 Lac-Chr13:1540578 Lac8g0351 Lac-Chr8:4304917 0.00E+00 dispersed
Lac13g0217 Lac-Chr13:1540578 Lac8g2602 Lac-Chr8:43649500 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0217 K03549 - csv:101212925 1447.95