Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0218 ATGACTAGGAAGTGGACTCCAGAGGAGGGTGAGCCGAAAGGATTGGGCCGTCTCGGGCCAATCCCGTGCTTGGTAGAGGCCGAGTCTCCTCCCCTCTGCTCGATCCGTGGTGACCCTGGATGTCCCGGATTCATCTGGTTGAATCCAAATTGTCTCCGAAAACCTAAAAACCCTAAGACAAGAAAAACATTGAAGGTGACGTGGCAAGCACCACACTATGCAGGTTTTGTTGTCCTTGCAGGCCACGTCTTTCCCCCTCTCAAACAAATCTACCGGCATGTGAAGGCACACGCGCAGTTTCCTCCCTCCGCCACCGCCTTCATCATCGTCGTCCACGTTCTTCCGGCGCTGTTTCTGTCCTCCGATCGCTTCAACTGTTTGAGGGTACTTGCACTTTACTTGCAGATCAAATTCTTGTCTTTCTGGTTCTCCCTGCCCCTGCCACGGGTAATGACTGTTCCTGGAATTATTTCTGAAATGGATGATTATGGGAGCAATGACGGAGATTCAGAGTCTTCATCTGTATTCCGTGAGCGGAAAATCATAGTTGCAAATATGTTGCCCTTGCAAGCTAAAAGAGATGGGCAATCTGGCAAATGGTGCTTCAGTTTAGACGAGGATTCAATTTTATTGCAGTTAAAGAATGGGTTTGCACCTGAGATGGAAGTTATATACGTCGGTTCCCTCAAGGTTGAAATCGACGCCAGCGAACAGGAAGAGGTTGCTCAGAAGCTGTTCGACAATTTTAACTGTGTACCTACATTTCTACCTAATGATCTCCAGAAGAAATTTTATCTTGGGTTCTGCAAACAGCAGCTATGGCCCTTATTCCATTACATGCTACCCATGTGCCCAGAGCATGGCGATCGCTTCGATCGGCTGCTTTGGCAAGCCTATGTTTCTGCAAATAAAATATTTGCTGACAAGGTGATGGAAATCATCAATCCTGAAGAAGATTCTGTTTGGGTTCATGATTATCATTTAATGGTTCTTCCAACGTTTCTTAGGAAGCGCTACAATCGAGTTAAACTTGGATTTTTTCTGCATAGCCCGTTTCCGTCATCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATTCTCCGTGGCCTGCTAAATTGTGATTTAGTTGGTTTTCATACATTTGATTATGCTCGTCACTTCCTCTCATGCTGCAGCAGAATGTTGGGCCTGGACTACGAATCTAAGCGGGGACATATTGGCCTAGATTATTTTGGCCGCACGGTATATATCAAAATTTTGCCTGTAGGCATTCACATGGGTCGGCTGGAATCAGTGATGAATCTTCCATCTACATCTGCTAAAGTCAGAGAAATTCGAGATCAGTTCATGGGGAAGAAATTAATCCTTGGTATTGATGACATGGACATATTTAAGGGCATAAGCCTGAAGCTTCTCGCTGTTGAACAGCTTTTACGGCAACATCCCGAGTTGCGAGGCAAAATAGTCCTTGTTCAAATAGTGAATCCTGCAAGGGGTTCAGGGAAAGATGTACATGAAGCTCAGAAGGAAACATACTTGGCTGCTGAAAGGATCAACGAAGCTTATGGTTCAAATAACTACAAACCAGTAATTCTGATTGATCGCCCTGTTCCACGTTTTGAGAAAACTGCTTATTACGCATTAGCAGAATGCTGCATAGTGAGTGCTGTAAGGGATGGTATGAATTTGGTTCCATACAAGTATATTGTTTGTAGGCAAGGAACTCCTCTTATGGATGAGGCTATGGGCTTACAAGTTGGTTCTCCTAGGACGAGTATGCTTGTTGTGTCCGAGTTTATTGGTTGCTCGCCTTCTTTAAGTGGAGCTATCAGGGTTAATCCTTGGGACATTGATGCTGTCGCCGATGCCTTGGAACTGGCCATAACCATGCAGGAGTCAGAGAAGCAGTTGCGGCATGAGAAACATTATCGATATGTCAGTTCCCATGATATAGGATATTGGTCTCGAAGTTTTATGCAGGACTTAGAGAGAGCATGTCAAGATCACTATAGTAAACGGTGCTGGGGAATTGGCTTGGGTCTTCGTTTTAGAGTTGTTTCTCTTTCTCCTGGGTTTAGGAAGTTAACAATTGATCACATTGTCTCAGCTTATAAGAGAACACATAGAAGGGCGATATTTTTGGATTACGATGGCACTATTATTTCACAAAGCTCTATAATTAAGACACCGAGCCCGGAAGTTATCTCTGTCTTGACTACGCTTTGCAACGACCCCTGTAACACTGTGTTCATTGTTAGTGGGAGGGGGAGAGATTCATTAGGTCAGTGGTTTGCCTCTTGTGAGATGTTGGGAATTGCAGCAGAACATGGGTACTTCATAAGGTGGGGTGGAACTTCAGAATGGGAAACTAGTCCGTTGTCTTCTGATCTGGATTGGATTAAAATTGTAGAGCCAGTTATGAGACTATATACGGAAGCAACAGATGGGTCGTCCATAGAACCCAAAGAGAGCGCTTTAGTCTGGCATCATCAAGATGCCGATTCTGACTTCGGATCCTGTCAAGCTAAGGAATTGCTGGACCATCTAGAAAACGTACTTGCCAACGAACCAGCAGTTGTTAAAAGGGGCCAACATATTGTTGAAGTGAAGCCACAGGGAGTAAGCAAAGGGTTGGTCGCAGAAAAGGTTCTCTCGAGAATGGTAGATAGTGGAAGACCACCTGATTTCGTGATGTGCATTGGAGATGATAGATCAGATGAAGATATGTTTGAGAGCATATTAAGCACCGTCTCTAGTCCTTCACTGCCTTCCGCTCCAGAAATTTTTGCCTGCACTGTCGGGCGAAAGCCAAGCAAGGCGAAGTTTTACCTCGATGATACTTCTGACGTCGTGAAATTACTGCAAGGCCTTGCCTCTTCGTCCCGTCCAAGACCTCGGCAACTACCACAAATGCGTGTTTCTTTTGAGAGTGTTTTTTGA 2943 44.95 MTRKWTPEEGEPKGLGRLGPIPCLVEAESPPLCSIRGDPGCPGFIWLNPNCLRKPKNPKTRKTLKVTWQAPHYAGFVVLAGHVFPPLKQIYRHVKAHAQFPPSATAFIIVVHVLPALFLSSDRFNCLRVLALYLQIKFLSFWFSLPLPRVMTVPGIISEMDDYGSNDGDSESSSVFRERKIIVANMLPLQAKRDGQSGKWCFSLDEDSILLQLKNGFAPEMEVIYVGSLKVEIDASEQEEVAQKLFDNFNCVPTFLPNDLQKKFYLGFCKQQLWPLFHYMLPMCPEHGDRFDRLLWQAYVSANKIFADKVMEIINPEEDSVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTVYIKILPVGIHMGRLESVMNLPSTSAKVREIRDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRQHPELRGKIVLVQIVNPARGSGKDVHEAQKETYLAAERINEAYGSNNYKPVILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPLMDEAMGLQVGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAITMQESEKQLRHEKHYRYVSSHDIGYWSRSFMQDLERACQDHYSKRCWGIGLGLRFRVVSLSPGFRKLTIDHIVSAYKRTHRRAIFLDYDGTIISQSSIIKTPSPEVISVLTTLCNDPCNTVFIVSGRGRDSLGQWFASCEMLGIAAEHGYFIRWGGTSEWETSPLSSDLDWIKIVEPVMRLYTEATDGSSIEPKESALVWHHQDADSDFGSCQAKELLDHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILSTVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTSDVVKLLQGLASSSRPRPRQLPQMRVSFESVF 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1552545 1559776 + Lag0040014.1 Lac13g0218 591374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0218 980 Gene3D - 710 833 IPR023214 -
Lac13g0218 980 Gene3D - 840 968 IPR023214 -
Lac13g0218 980 Pfam Trehalose-phosphatase 714 949 IPR003337 GO:0005992(InterPro)
Lac13g0218 980 NCBIfam trehalose-phosphatase 709 958 IPR003337 GO:0005992(InterPro)
Lac13g0218 980 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 710 827 - -
Lac13g0218 980 SUPERFAMILY HAD-like 711 958 IPR036412 -
Lac13g0218 980 CDD HAD_TPP 712 953 - -
Lac13g0218 980 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 840 971 - -
Lac13g0218 980 Gene3D Glycogen Phosphorylase B; 432 648 - -
Lac13g0218 980 Pfam Glycosyltransferase family 20 179 664 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac13g0218 980 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 172 431 - -
Lac13g0218 980 NCBIfam HAD-IIB family hydrolase 712 913 IPR006379 -
Lac13g0218 980 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 179 668 - -
Lac13g0218 980 CDD GT20_TPS 179 664 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac13g0218 980 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 147 960 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lac13g0218 980 FunFam Alpha,alpha-trehalose-phosphate synthase 433 648 - -
Lac13g0218 980 Gene3D Glycogen Phosphorylase B; 171 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0751 Lac-Chr12:7898140 Lac13g0218 Lac-Chr13:1552545 0.00E+00 dispersed
Lac13g0218 Lac-Chr13:1552545 Lac5g0203 Lac-Chr5:1772768 0.00E+00 dispersed
Lac13g0218 Lac-Chr13:1552545 Lac3g0693 Lac-Chr3:5344654 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0218 K16055 - csv:101212688 1642.86