Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0233 ATGTCCGTATCGATTTCCAACTGCTTCTCTGATTTACTCTGCCAGGAGGATTCCTCCGGCGTCTTGTCCGGCGAGTCGCCGGGATGTTCTTCCGACCTCGATTCTCCGGCCTGCATCGAGGAATCTATCGCCGTCTTCATCAAGGACGAGCGTCACTTCGTCCCCGATTACGACTGTTTGTCGCGCTTCCAATCTCCGTCGCTCGACGCGGCCGCTAGATTAGACTCTGTTGCATGGATTCTTAAGGTTCAAGCCTACTACGGTTTTCAGCCGTTGACGGCGTATCTCTCCGTCAACTACTTGGATCGATTCCTTTGTTCACGCCGTTTGCCGCAAACAAATGGGTGGCCTTTGCAACTCCTCTCTGTTGCTTGCCTCTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCTTTACTGGATCTTCAGGTTGAGGGGGCTAAATATATATTTGAACCCAGAACAATATGCAGGATGGAACTGTTGGTGCTGAGAGTATTGGATTGGCGGCTGCGTTCTGTAACGCCGTTCAATTTCATCGCATTCTTTGCTTGCAAGCTCGATCCATCGGGAGATTTCATCGGGTTTCTTATCTCAAGAGCAACAGAAATTATACTATCAAATATCCGAGAGGTAATCTTTCTGGAGTACTGGCCATCGTGTATTGCGGCGGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCGAATTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGGTTAATGCAAGAGATTGTGCTTGATAGTAGCCAGAGCAAGTCCCCAAAAATCTTACCTCAGTTTAGAGTGACAGTCCGCACTAGAATGAGATCCAGCGACTTATCCTCCTCCTACTCCTCCTCCTCCTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGAGCCACTGGGTAGATGATGACAAAGGTAACACCGAAGAATGA 1005 48.46 MSVSISNCFSDLLCQEDSSGVLSGESPGCSSDLDSPACIEESIAVFIKDERHFVPDYDCLSRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIILSNIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCSGLRKENIIGCYRLMQEIVLDSSQSKSPKILPQFRVTVRTRMRSSDLSSSYSSSSSSSSSSSPNKRRKLNQSHWVDDDKGNTEE 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1657789 1660166 - Lag0040029.1 Lac13g0233 591389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0233 334 SMART cyclin_7 78 166 IPR013763 -
Lac13g0233 334 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Lac13g0233 334 SMART Cyclin_C_2 175 310 IPR004367 -
Lac13g0233 334 ProSitePatterns Cyclins signature. 73 104 IPR048258 -
Lac13g0233 334 MobiDBLite consensus disorder prediction 319 334 - -
Lac13g0233 334 Pfam Cyclin, C-terminal domain 175 287 IPR004367 -
Lac13g0233 334 PANTHER CYCLINS 42 274 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lac13g0233 334 SUPERFAMILY Cyclin-like 35 172 IPR036915 -
Lac13g0233 334 Gene3D - 47 236 - -
Lac13g0233 334 MobiDBLite consensus disorder prediction 292 318 - -
Lac13g0233 334 Pfam Cyclin, N-terminal domain 43 173 IPR006671 -
Lac13g0233 334 Gene3D - 56 173 - -
Lac13g0233 334 SUPERFAMILY Cyclin-like 157 279 IPR036915 -
Lac13g0233 334 FunFam D2/4-type cyclin 56 173 - -
Lac13g0233 334 CDD CYCLIN_AtCycD-like_rpt2 175 265 - -
Lac13g0233 334 MobiDBLite consensus disorder prediction 292 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0233 Lac-Chr13:1657789 Lac6g0985 Lac-Chr6:8916746 4.90E-44 dispersed
Lac11g2105 Lac-Chr11:36972751 Lac13g0233 Lac-Chr13:1657789 1.60E-06 transposed
Lac13g1302 Lac-Chr13:11999476 Lac13g0233 Lac-Chr13:1657789 8.00E-06 transposed
Lac5g2622 Lac-Chr5:44733752 Lac13g0233 Lac-Chr13:1657789 7.00E-54 transposed
Lac13g0233 Lac-Chr13:1657789 Lac6g0031 Lac-Chr6:306800 1.20E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0233 K18810 - csv:101209417 582.022