Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0238 ATGGAGTTTCTGTACTTCATAATTATCACCTCCATTTTTCTGCCTTTCAGCTTCTCTCTGAAGCTCGAAGCTACCATCCATGGAACAAGCCCGAGTTCCATTCAGACCAATCAAAATTCTTCACTCAGACACCAAATTCTGGAGCTCGCCAATGATCCCACTACTTCAAATTGGATGAAGACGATAAGGAGAAAAATCCACGAGAACCCAGAGCTTGCATATGAAGAATTTCAAACCAGTAGGCTCATTAGAGAGGAGCTTGACAATCTCGGCGTTTCTTATCGGTGGCCAGTCGCCGGTACCGGCGTAGTGGCTACGGTCGGCTCTGGTTCTCCTCCCTTTGTCGCTCTAAGAGCAGATATGGATGCTTTGCCTATTCAGGAATTGGTAGATTGGGAGCATAAGAGCAAAGTGAAGGGGAAAATGCATGCTTGTAGTCATGATGCTCATGTTGCTATGCTCCTTGGCGCTACTAAAATTCTGCATCAACTGCGACAGAAATTACAGGGCACTGTTGTTCTTATTTTTCAGCCGGCGGAGGAGAGAGGAGGAGGAGCAAAAGACATGATAAAAGAGGGCGTCCTTGATGGTGTAGGAGCTATATTTGGGCTGCACATTATGCATAAATATCCGGTCGGCGTTGTCGCTTCACGTCCCGGCGAGTTTCTTGCGGGCTGTGGAAGCTTCAAAGCAAAGATAAAGGGGAAAGGGGGTCATGCTGCAATTCCACAGCATTCAATTGATCCTGTTTTGGCAGCTTCAGCAGCAATTGTTAGTTTGCAAAACATAGTCTCAAGAGAGATAGACCCTCTAGATTCCCAGGTGGTTTCGGTAGCCATGGTTCAAGCAGGATCTGCACTCAATGTCATCCCGGACTCGGCCACCATTGCTGGTACCTTCAGAGCTTTCAGCAAGAAGAGCTTCAATGCTCTCAGAGACAGGATAAAAGAGGTCATAAATGGGCAGGCAGCGGTGCATCGGTGCACGGCGGAGATTGATTTCCTAGGAAAGGAACACCCGACAATTCCTCCGACTGTAAATGACAAGAAAATTTATGAACATGCTCGACGTGTTTCTATCGAAATTGTAGGAAAGGAAAACACAAAAGTATCTCCAAACTTCATGGGAAGTGAAGATTTTGCTTTCTTTTCAGACAGAGTGCCAGGATCTTTCTTTTTTCTAGGCACATATAATGAGAGGATCGGAGCTATATATCCTCCACACAGCCCTCACTATAAAATTGATGAAAATGTGCTTCCTATCGGCGCAGCAATTCATGCAGCATTTGCATATTCTTATCTCTTGAATTCATCATCAGCATCCCATTCTTGCTGTGACCATTGA 1344 45.54 MEFLYFIIITSIFLPFSFSLKLEATIHGTSPSSIQTNQNSSLRHQILELANDPTTSNWMKTIRRKIHENPELAYEEFQTSRLIREELDNLGVSYRWPVAGTGVVATVGSGSPPFVALRADMDALPIQELVDWEHKSKVKGKMHACSHDAHVAMLLGATKILHQLRQKLQGTVVLIFQPAEERGGGAKDMIKEGVLDGVGAIFGLHIMHKYPVGVVASRPGEFLAGCGSFKAKIKGKGGHAAIPQHSIDPVLAASAAIVSLQNIVSREIDPLDSQVVSVAMVQAGSALNVIPDSATIAGTFRAFSKKSFNALRDRIKEVINGQAAVHRCTAEIDFLGKEHPTIPPTVNDKKIYEHARRVSIEIVGKENTKVSPNFMGSEDFAFFSDRVPGSFFFLGTYNERIGAIYPPHSPHYKIDENVLPIGAAIHAAFAYSYLLNSSSASHSCCDH 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1685327 1687550 - Lag0040034.1 Lac13g0238 591394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0238 447 Pfam Peptidase family M20/M25/M40 116 430 IPR002933 GO:0016787(InterPro)
Lac13g0238 447 NCBIfam amidohydrolase 60 422 IPR017439 GO:0016787(InterPro)
Lac13g0238 447 Gene3D - 224 342 - -
Lac13g0238 447 SUPERFAMILY Bacterial exopeptidase dimerisation domain 224 343 IPR036264 -
Lac13g0238 447 Pfam Peptidase dimerisation domain 225 323 IPR011650 -
Lac13g0238 447 SUPERFAMILY Zn-dependent exopeptidases 56 436 - -
Lac13g0238 447 CDD M20_IAA_Hyd 59 434 IPR044757 GO:0009850(InterPro)|GO:0016787(InterPro)
Lac13g0238 447 PIRSF Amidohydrol_AmhX 45 438 IPR017439 GO:0016787(InterPro)
Lac13g0238 447 FunFam N-acetyldiaminopimelate deacetylase 224 342 - -
Lac13g0238 447 Gene3D Zn peptidases 61 419 - -
Lac13g0238 447 PANTHER PEPTIDASE M20 FAMILY MEMBER 36 438 IPR017439 GO:0005783(PANTHER)|GO:0009850(PANTHER)|GO:0010179(PANTHER)|GO:0016787(PANTHER)|GO:0016787(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0238 K14664 - - csv:101208682 724.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0238 Lac-Chr13:1685327 Lac3g0983 Lac-Chr3:8015090 2.90E-132 dispersed
Lac13g0238 Lac-Chr13:1685327 Lac1g2299 Lac-Chr1:44388111 1.60E-114 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g786 . . . . . . . . . . . . . . Sed06g1602 . . Bhi07g01672 Tan04g1177 Cmetu10g1745 Lac13g0238 Hepe10g1675 . . Cla05g02511 Cam05g2695 Cec05g2729 Cco05g2763 Clacu05g2698 Cmu05g2552 Cre05g2667 . . . . Lsi04g00510 Csa05g02371 Chy10g00935 Cme10g00490 . . Bda07g01569 . Bpe11g01737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011718 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30