Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0239 ATGGCTGAACCAAGTGGAACCGAGGCAACCAAAGGCACCGGGGACCGAACGGAGGTGGAAGGACTCGGCCCACGACGGACCATTTGGGTTGGGCCAAGGCCCTATCCCTCCGGCCTTGGCTCAACCCCTAAGCCTGTTTCGCCTCCAAAGTCCATTTTTCGGTCCTGTTTTCAAGCTCGTGTCGGATTGTCCTCGTCCGCTCCTTGCACTTCGAAGTGGTCTAAAATTACCTATAACAGAGCTTATAAACACTACCAAAACCCACCTATAGTTTTCTTTCCATTTTCTAGAAAAGGAGAAAGTGGGTTATTTTCTTCAAGCTCTTGTGTTGAAAAAAAAGTGAAACTTTTTGGAATCGAGCTCAACCCATCAAAGAATAACGATGAATTATTGGCCACAAGTTATGGTGAAGGCGACGAGAGTGTAAACTCTTCGACCACTGTCTCTTTTGAAAGATCAGAACAAGCCATTATTAACAACAACAAAACGAAATTCGAGTGCCAATATTGTTTCAAAGAGTTCACGAATTCTCAAGCTTTGGGAGGCCATCAAAATGCCCACAAGAAAGAGAGGTTGAAGAAGAAGAAGATGCAGCTTCAAGCTCGAAAAGCCACGCTCAGTTATTATCTTCAGCCATTTCAAACCAATAATTTTCTCTACGATTTTCCTTCTTCTCCGCCATGTAATTTCTACACTGATGATTATTCTTCGCAGATTAGTTTCAACCAAAACGACGCCGAATTTATCCATTTCGATGGTTCTGTGTCTTTCTTGCCGGAAGAACGGCGGTTGTTCACTTTAACGCCGGCCGACGGGTCGTCCGGCGGCGCCGTCAAGCCTGTCGTTTTTCAGTCGTCGTCGTCTTCTTCTTCTTTACCTGTTTCTGAACTTACCCCTTCTTGTAAATCTTTGGATCTTCATCTTGGTCTCAATTAG 936 44.87 MAEPSGTEATKGTGDRTEVEGLGPRRTIWVGPRPYPSGLGSTPKPVSPPKSIFRSCFQARVGLSSSAPCTSKWSKITYNRAYKHYQNPPIVFFPFSRKGESGLFSSSSCVEKKVKLFGIELNPSKNNDELLATSYGEGDESVNSSTTVSFERSEQAIINNNKTKFECQYCFKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLSYYLQPFQTNNFLYDFPSSPPCNFYTDDYSSQISFNQNDAEFIHFDGSVSFLPEERRLFTLTPADGSSGGAVKPVVFQSSSSSSSLPVSELTPSCKSLDLHLGLN 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1697328 1699355 - Lag0040035.1 Lac13g0239 591395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0239 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 192 IPR013087 -
Lac13g0239 311 PANTHER ZINC FINGER PROTEIN 5 102 310 IPR044299 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009736(PANTHER)|GO:0009740(PANTHER)|GO:0010026(PANTHER)|GO:0010090(InterPro)
Lac13g0239 311 SUPERFAMILY beta-beta-alpha zinc fingers 162 192 IPR036236 -
Lac13g0239 311 MobiDBLite consensus disorder prediction 1 46 - -
Lac13g0239 311 ProSitePatterns Zinc finger C2H2 type domain signature. 167 187 IPR013087 -
Lac13g0239 311 Gene3D Classic Zinc Finger 141 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0239 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0239 Lac-Chr13:1697328 Lac12g0280 Lac-Chr12:3117165 6.20E-17 dispersed
Lac13g0239 Lac-Chr13:1697328 Lac4g0493 Lac-Chr4:11355792 6.60E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g788 . . Bda01g02238 . Bpe13g00479 . . . Cmo04g01671 . . . . . Sed08g1992 . Cpe01g01413 Bhi07g01671 Tan04g1173 Cmetu04g1975 Lac13g0239 Hepe10g1677 . . Cla05g02510 Cam05g2694 Cec05g2728 Cco05g2762 Clacu05g2697 Cmu05g2551 Cre05g2666 . . . . Lsi04g00509 Csa05g02372 Chy10g00937 . . . . . . . Bma01g00068 Bma06g00635 . . . Cma04g01597 . Car04g01643 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002681 1 2 0 2 2 2 3 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 1 1 2 2 2 2 1 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23129 None None None None Lac TF