Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0240 ATGGAGTGCGCCGGCAAGGGACGAGGAACTCGTTGCACCGGCCCGGCGACACGACGCTGTGGTCGCTGCGGAGCTGTTGCTTATTGTTCAGTCGATCACCAGGTTAAACATTGGAATGATCATAAAGACGAATGCAAAAGGTTTGAGCAACAGATGGAGAGAATAGATGCCTTGTATGAGTTTCCTTTCACATTTTCCGAGGAGGCTACTGTTCAGTTGTGTCAAAAGCAGGAGAGTAGGTGCTCATTTTTGAGCAAAAGGGCCATTCACAAAGTTGGAATGTGGTTCTACGAATGTCCTTGTGGGGAAGCTGCTACATCTTATTATTTCTCAAGATTAAATGATAGTTGGGTTCTACCTAGAACCCTTTGTCCATGTAGTGAACCGCTTTCACCAATTACAAAACGTTTACACAGTTGGAAGGACTATTATGATTGGAGATGCATCCCCCTTCACTCTCCTGCTGCTTTGCTTCTTCATTGGCCACTTACAATAAGTTATGCTACGCAAGTTGCTGGTTTGGAGCCCTTGTCTCCAGAATTTGGTGACACATTATGCATACACTATCTAGGGCCTGAGAAGGAGCTTCTACAGCTTTCTGTCTTTTCTGAGTTGCTTGCACTTTTCCCTGGGGTGGCATTACAAATAGAGCTTGTTGGGCCTAGAATTCCCGAAGAAATGAATGGTGAGACCATTAACCTTTGTAGTTATGCTAAGTGCCTTCAGATGGATTGTGTTTGCAAATCTTCAAGCAAAGATGTTGACAGGGATGTATATTCTAATAAACATCCAAGGTTGACATTGAAGCTTTGGAGAGGGTTTTACCATGATTGTTACAAAGACATTACCAAAGATAATTATCCTCACTTAATCATTGCTCCAAATGCTGGAATTGCTGCCTATTCCAGTTGGCTACCTACTATTGAACTTATTAAGGAGATGAATGTCCCAGCAATCTTTTCTGATTTCTGTGAAGAAGCTTGCCATCTTGGAGCTTCTTGTTTGAGCAGTGTGATAGGCCACCCCATTACTTTCCCGATTCAGTTAAACCCATTCCGGCAACCAATAGCCATTGAAGACACTGCCCTGTTTCTTCCTTGCTATTCAAACTGCTTCCTGTACGCTTTCGGTGCGAATTTGGGTCGGGCTTTGAAATTCCCCTTCAGCGCCAACGATGTGCTTCCGGTTCTTCCACGACAGATATCGTGGCCGGTGCTTAATAATCTCCACTCTGCCGTGGATTTGTTGCCGTCTTATGTTGGATCAGTGACTCCCAGTAATGGAACAATTGAGTGGAAAGGAGCTTGCTTCTTCACTAACGAAGCTCGGATTGATTTTACTGAAGGTGATAGAGGCTTGGGAGGTGGCGTTCTCCATCTCAAGACATCTGCAGCACACAGCTGGACATGTATGGATCTATATGTTTTCGCTACACCCTACAGGATTACATGGGATTACTATTTCGCTGCACGGGAGCATACATTGAAGTTTGAGTCATGGGAAGAACCTGCTGAGTTGGAATATGTAAAGCAACATGGGATTTCTGTTTTTCTTATGCCGTCTGGGATGTTGGGAACTCTGCTCTCTTTGGTAGATGTGTTGCCTCTGTTTTCCAATACCATATGGGGCCAAAATGCTAATTTAGCTTTTCTTAAGAAGCACATGGGTGCTACATTTAAAAAGCGATCCCAGCCTTCGCAAGCAACCATTAATCCAGATGATGTTCATTCTGGGGATTTCTTAGCAGTGTCAAAAATACGTGGACGGTGGGGAGGCTTTGAGACATTAGAAAAGTGGGTAACGGGTTCTTTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAACAGGGTAATCTTTGGGTTGGTGAATCAGGACACGAAAATGAGAAGGGTGAAGAAATCATTGTTGTGATTCCATGGGATGAATGGTGGGAGTTGGCACTCAAGGACAACTCAAATCCACAAATAGCCTTGCTTCCTTTGCATCCAGAGATACGTGCAAAATTTAACGCTACTGCAGCATGGGAATATGCTCGAAGCATGTCTGGGAAGCCATATGGTTATCACAACATGATTTTTAGCTGGATTGATACTGTAACTGACAACTTTCCTCCTCCTCTTGATGCTCACTTGGTTATTTCTGTCATGTCTATGTGGACAAGGTTGCAGCCTGCATATGCTGCAAACATGTGGAATGAGGCTCTGAACAAGCGGCTAGGAACTGAGGATTTGGACTTGCACGATATTCTAGTCGAGACTGAAAAGCGAGGAATTCCTTTTGATGTACTGCTTACGATTCCAGAACAAGATGAATGGGTCTACAGTGATGGGAAATCGACAACATGTGTTGCCTTTATCCTTGCAATGTACAAGGAGGCTGGAATATTTGGTCCTATTTCCAGCTCCATTCAAGTAACAGAGTTCACTATTCGGGATGCATATATGCTGAGGATTTTTGAGGACAACCAAACACGCCTGCCAAGTTGGTGCAATAATGAAAGTGATAAGCTTCCTTTTTGCCAGATTCTTGAAAGTTATGCCTGTCGTTATCCTATCACTTCTACTCATCCTGCATTCGAATTTTTCACCAAAGACACGAATTCGAAATTTCATGCTTTGATATCTTCATCTGCAGTGAATCGACGTTACGTTGTTCGGTTTCGTACCCTTATTTTCCCATCGAGGCAGCCACAACAGCACAAACGGTGTGCTGTTGGTCACAGTATGAGCAACAAGTTGTCTCATAATAAAATGAATAGACAACAAATGCAAAAAAACATGGGATTTGTAGACAACCAATCATAG 2805 43.49 MECAGKGRGTRCTGPATRRCGRCGAVAYCSVDHQVKHWNDHKDECKRFEQQMERIDALYEFPFTFSEEATVQLCQKQESRCSFLSKRAIHKVGMWFYECPCGEAATSYYFSRLNDSWVLPRTLCPCSEPLSPITKRLHSWKDYYDWRCIPLHSPAALLLHWPLTISYATQVAGLEPLSPEFGDTLCIHYLGPEKELLQLSVFSELLALFPGVALQIELVGPRIPEEMNGETINLCSYAKCLQMDCVCKSSSKDVDRDVYSNKHPRLTLKLWRGFYHDCYKDITKDNYPHLIIAPNAGIAAYSSWLPTIELIKEMNVPAIFSDFCEEACHLGASCLSSVIGHPITFPIQLNPFRQPIAIEDTALFLPCYSNCFLYAFGANLGRALKFPFSANDVLPVLPRQISWPVLNNLHSAVDLLPSYVGSVTPSNGTIEWKGACFFTNEARIDFTEGDRGLGGGVLHLKTSAAHSWTCMDLYVFATPYRITWDYYFAAREHTLKFESWEEPAELEYVKQHGISVFLMPSGMLGTLLSLVDVLPLFSNTIWGQNANLAFLKKHMGATFKKRSQPSQATINPDDVHSGDFLAVSKIRGRWGGFETLEKWVTGSFAGHTAVCLKDEQGNLWVGESGHENEKGEEIIVVIPWDEWWELALKDNSNPQIALLPLHPEIRAKFNATAAWEYARSMSGKPYGYHNMIFSWIDTVTDNFPPPLDAHLVISVMSMWTRLQPAYAANMWNEALNKRLGTEDLDLHDILVETEKRGIPFDVLLTIPEQDEWVYSDGKSTTCVAFILAMYKEAGIFGPISSSIQVTEFTIRDAYMLRIFEDNQTRLPSWCNNESDKLPFCQILESYACRYPITSTHPAFEFFTKDTNSKFHALISSSAVNRRYVVRFRTLIFPSRQPQQHKRCAVGHSMSNKLSHNKMNRQQMQKNMGFVDNQS 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1703067 1714437 - Lag0040036.1 Lac13g0240 591396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0240 934 Gene3D endopeptidase domain like (from Nostoc punctiforme) 574 703 - -
Lac13g0240 934 Pfam MSS51 C-terminal domain 162 359 IPR046824 -
Lac13g0240 934 Pfam MYND finger 11 45 IPR002893 -
Lac13g0240 934 SUPERFAMILY HIT/MYND zinc finger-like 11 51 - -
Lac13g0240 934 PANTHER OS01G0793500 PROTEIN 374 853 - -
Lac13g0240 934 Gene3D - 3 51 - -
Lac13g0240 934 ProSiteProfiles Zinc finger MYND-type profile. 3 45 IPR002893 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0240 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0240 Lac-Chr13:1703067 Lac2g1388 Lac-Chr2:11737970 6.60E-147 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g793 . . . . . . . . . . . . . . Sed04g0658 . . Bhi07g01669 Tan04g1170 Cmetu10g1060 Lac13g0240 Hepe10g1679 . . . . . . . . . . . . Cone12ag0622 . Csa05g02374 Chy10g00939 Cme10g00487 . . Bda07g01572 . Bpe11g01740 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000656 4 3 3 2 4 4 4 3 3 3 2 3 5 3 3 6 3 5 4 3 3 3 2 2 4 3 1 4 2 3 97