Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0242 ATGGCTCGAACCCCTGTTTTCTCCCGCCGCCGAAGGTCCGATCAGATCGACGCTCTAGATCGCTTCCCCACCTCTGATTCCGACGTCCACGTCCTCGCCGTCGACGACAGCCTCGTCGACCGTACAGTAATCCAGCGTCTCCTCCGCCTCACCGCCTGCCGAGTTACTGCAGTGGATAGTGGAATTAAAGCTCTACAGTTCCTCGGATTGCAAGATGAGACGAATTCCCAAGTTGGTTTTCATGGCTTGAAGGTTGATATGATCATCACCGACTACTGCATGCCCGGAATGACAGGCTACGAATTGCTCAAGAAAATCAAGGAATCTTCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAGAACGTGGTGGCGAGGATAGACAGATGTTTAGAGGAAGGAGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAACGGCTCAGGGAATATATGGTGGGGGATGAAAAGACTGGAAGTGAAAGAAGTGGGATCAACAAAAGGAAGCTACGAGAGCCGTGTGATCAACCCTCATCGTCACCGTCCATTTCATCACCAGCATCGTCCGATTCCACTCCATCCTGCCCATCATCTTCATCACCGTCAGATTCGCTTCAATCCACACCATCATCATCAGAACCATCTTCTCCGACGTCCACTCCTCAATCGGACGGCTCCAAATGA 699 50.93 MARTPVFSRRRRSDQIDALDRFPTSDSDVHVLAVDDSLVDRTVIQRLLRLTACRVTAVDSGIKALQFLGLQDETNSQVGFHGLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKTGSERSGINKRKLREPCDQPSSSPSISSPASSDSTPSCPSSSSPSDSLQSTPSSSEPSSPTSTPQSDGSK 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1723577 1724574 + Lag0040038.1 Lac13g0242 591398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0242 232 MobiDBLite consensus disorder prediction 180 232 - -
Lac13g0242 232 SUPERFAMILY CheY-like 28 154 IPR011006 -
Lac13g0242 232 SMART REC_2 29 154 IPR001789 GO:0000160(InterPro)
Lac13g0242 232 MobiDBLite consensus disorder prediction 161 232 - -
Lac13g0242 232 CDD REC_typeA_ARR 31 153 - -
Lac13g0242 232 Gene3D - 29 187 - -
Lac13g0242 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 218 IPR045279 GO:0009736(InterPro)
Lac13g0242 232 MobiDBLite consensus disorder prediction 161 179 - -
Lac13g0242 232 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160(InterPro)
Lac13g0242 232 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0242 Lac-Chr13:1723577 Lac1g1457 Lac-Chr1:35293500 3.00E-40 dispersed
Lac13g0242 Lac-Chr13:1723577 Lac3g0664 Lac-Chr3:5168454 5.40E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23130 PF00072 Response_reg 2.60E-21 CL0304 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0242 K14492 - csv:101209506 342.428