Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0242 ATGGCTCGAACCCCTGTTTTCTCCCGCCGCCGAAGGTCCGATCAGATCGACGCTCTAGATCGCTTCCCCACCTCTGATTCCGACGTCCACGTCCTCGCCGTCGACGACAGCCTCGTCGACCGTACAGTAATCCAGCGTCTCCTCCGCCTCACCGCCTGCCGAGTTACTGCAGTGGATAGTGGAATTAAAGCTCTACAGTTCCTCGGATTGCAAGATGAGACGAATTCCCAAGTTGGTTTTCATGGCTTGAAGGTTGATATGATCATCACCGACTACTGCATGCCCGGAATGACAGGCTACGAATTGCTCAAGAAAATCAAGGAATCTTCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAGAACGTGGTGGCGAGGATAGACAGATGTTTAGAGGAAGGAGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAACGGCTCAGGGAATATATGGTGGGGGATGAAAAGACTGGAAGTGAAAGAAGTGGGATCAACAAAAGGAAGCTACGAGAGCCGTGTGATCAACCCTCATCGTCACCGTCCATTTCATCACCAGCATCGTCCGATTCCACTCCATCCTGCCCATCATCTTCATCACCGTCAGATTCGCTTCAATCCACACCATCATCATCAGAACCATCTTCTCCGACGTCCACTCCTCAATCGGACGGCTCCAAATGA 699 50.93 MARTPVFSRRRRSDQIDALDRFPTSDSDVHVLAVDDSLVDRTVIQRLLRLTACRVTAVDSGIKALQFLGLQDETNSQVGFHGLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKTGSERSGINKRKLREPCDQPSSSPSISSPASSDSTPSCPSSSSPSDSLQSTPSSSEPSSPTSTPQSDGSK 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1723577 1724574 + Lag0040038.1 Lac13g0242 591398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0242 232 MobiDBLite consensus disorder prediction 180 232 - -
Lac13g0242 232 SUPERFAMILY CheY-like 28 154 IPR011006 -
Lac13g0242 232 SMART REC_2 29 154 IPR001789 GO:0000160(InterPro)
Lac13g0242 232 MobiDBLite consensus disorder prediction 161 232 - -
Lac13g0242 232 CDD REC_typeA_ARR 31 153 - -
Lac13g0242 232 Gene3D - 29 187 - -
Lac13g0242 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 218 IPR045279 GO:0009736(InterPro)
Lac13g0242 232 MobiDBLite consensus disorder prediction 161 179 - -
Lac13g0242 232 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160(InterPro)
Lac13g0242 232 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0242 K14492 - - csv:101209506 342.428
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0242 Lac-Chr13:1723577 Lac1g1457 Lac-Chr1:35293500 3.00E-40 dispersed
Lac13g0242 Lac-Chr13:1723577 Lac3g0664 Lac-Chr3:5168454 5.40E-50 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0714 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.6e-53 208.4
Lac3g0194 . 18 386 Response Regulator Gene Family AT4G31920 54.8 1.7e-89 327.8
Lac6g2882 . 17 337 Response Regulator Gene Family AT4G31920 52.7 4.8e-81 299.7
Lac11g0905 . 25 289 Response Regulator Gene Family AT4G31920 52.9 2.0e-71 267.7
Lac7g0922 . 16 270 Response Regulator Gene Family AT4G31920 53.9 2.1e-68 257.7
Lac6g0714 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.6e-62 235.7
Lac2g0557 . 93 256 Response Regulator Gene Family AT1G67710 53.5 1.2e-40 165.2
Lac7g0922 . 99 261 Response Regulator Gene Family AT1G67710 53.8 9.8e-40 162.2
Lac6g2882 . 17 380 Response Regulator Gene Family AT2G25180 52.8 1.2e-85 315.1
Lac7g0922 . 18 290 Response Regulator Gene Family AT2G25180 54.7 6.0e-77 286.2
Lac6g0714 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.9e-68 256.9
Lac7g0922 . 79 308 Response Regulator Gene Family AT2G01760 50.4 3.2e-53 206.5
Lac3g0194 . 79 303 Response Regulator Gene Family AT2G01760 53.9 1.8e-48 190.7
Lac6g0714 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.3e-46 184.5
Lac6g0714 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.6e-62 237.7
Lac7g0922 . 17 241 Response Regulator Gene Family AT4G16110 67.5 4.9e-80 296.6
Lac11g0905 . 26 251 Response Regulator Gene Family AT4G16110 66.7 2.4e-79 294.3
Lac2g0557 . 11 234 Response Regulator Gene Family AT4G16110 57.8 3.2e-63 240.7
Lac6g0714 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.4e-58 225.3
Lac3g0194 . 17 249 Response Regulator Gene Family AT4G16110 54.1 1.0e-56 219.2
Lac6g2882 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.5e-52 205.3
Lac3g0664 . 20 174 Response Regulator Gene Family AT3G48100 71.3 1.9e-53 206.5
Lac13g0242 . 29 162 Response Regulator Gene Family AT3G48100 70.1 2.1e-49 193.0
Lac1g1457 . 10 156 Response Regulator Gene Family AT3G48100 57.1 1.8e-40 163.3
Lac10g2145 . 3 153 Response Regulator Gene Family AT3G48100 55.0 5.3e-40 161.8
Lac13g0750 . 4 165 Response Regulator Gene Family AT3G48100 53.7 1.3e-38 157.1
Lac8g2104 . 11 157 Response Regulator Gene Family AT3G48100 56.5 1.3e-38 157.1
Lac8g1837 . 18 163 Response Regulator Gene Family AT3G48100 56.5 3.8e-38 155.6
Lac13g0242 . 1 201 Response Regulator Gene Family AT1G59940 61.0 9.2e-56 214.9
Lac3g0664 . 22 174 Response Regulator Gene Family AT1G59940 64.1 8.3e-49 191.8
Lac8g2104 . 5 158 Response Regulator Gene Family AT1G59940 57.1 1.4e-40 164.5
Lac10g2145 . 8 151 Response Regulator Gene Family AT1G59940 59.0 5.4e-40 162.5
Lac13g0750 . 9 163 Response Regulator Gene Family AT1G59940 57.4 9.2e-40 161.8
Lac1g1457 . 11 154 Response Regulator Gene Family AT1G59940 56.3 2.7e-39 160.2
Lac13g1253 . 18 149 Response Regulator Gene Family AT1G59940 62.1 1.7e-38 157.5
Lac8g1837 . 2 168 Response Regulator Gene Family AT1G59940 52.4 3.0e-38 156.8
Lac13g0242 . 16 185 Response Regulator Gene Family AT1G10470 65.3 1.6e-52 203.8
Lac3g0664 . 30 160 Response Regulator Gene Family AT1G10470 73.3 1.4e-48 190.7
Lac10g2145 . 10 151 Response Regulator Gene Family AT1G10470 59.2 7.0e-40 161.8
Lac1g1457 . 17 154 Response Regulator Gene Family AT1G10470 60.9 2.7e-39 159.8
Lac8g2104 . 5 163 Response Regulator Gene Family AT1G10470 54.1 2.7e-39 159.8
Lac8g1837 . 18 177 Response Regulator Gene Family AT1G10470 51.6 8.6e-38 154.8
Lac13g0750 . 11 146 Response Regulator Gene Family AT1G10470 60.3 1.9e-37 153.7
Lac13g1253 . 20 149 Response Regulator Gene Family AT1G10470 61.5 2.5e-37 153.3
Lac3g0664 . 20 174 Response Regulator Gene Family AT3G48100 71.3 1.9e-53 206.5
Lac13g0242 . 29 162 Response Regulator Gene Family AT3G48100 70.1 2.1e-49 193.0
Lac1g1457 . 10 156 Response Regulator Gene Family AT3G48100 57.1 1.8e-40 163.3
Lac10g2145 . 3 153 Response Regulator Gene Family AT3G48100 55.0 5.3e-40 161.8
Lac13g0750 . 4 165 Response Regulator Gene Family AT3G48100 53.7 1.3e-38 157.1
Lac8g2104 . 11 157 Response Regulator Gene Family AT3G48100 56.5 1.3e-38 157.1
Lac8g1837 . 18 163 Response Regulator Gene Family AT3G48100 56.5 3.8e-38 155.6
Lac3g0664 . 19 163 Response Regulator Gene Family AT5G62920 72.4 6.1e-52 201.4
Lac13g0242 . 11 175 Response Regulator Gene Family AT5G62920 61.8 5.3e-48 188.3
Lac1g1457 . 12 156 Response Regulator Gene Family AT5G62920 57.9 2.4e-40 162.9
Lac10g2145 . 10 153 Response Regulator Gene Family AT5G62920 56.3 2.6e-39 159.5
Lac8g2104 . 11 157 Response Regulator Gene Family AT5G62920 58.1 2.6e-39 159.5
Lac8g1837 . 18 158 Response Regulator Gene Family AT5G62920 57.7 5.5e-37 151.8
Lac13g0750 . 11 146 Response Regulator Gene Family AT5G62920 58.8 7.2e-37 151.4
Lac3g0664 . 30 179 Response Regulator Gene Family AT1G19050 71.9 5.1e-52 201.8
Lac13g0242 . 28 185 Response Regulator Gene Family AT1G19050 57.9 3.3e-43 172.6
Lac10g2145 . 8 153 Response Regulator Gene Family AT1G19050 55.5 5.0e-39 158.7
Lac1g1457 . 11 156 Response Regulator Gene Family AT1G19050 54.8 6.5e-39 158.3
Lac8g2104 . 3 160 Response Regulator Gene Family AT1G19050 53.2 5.5e-38 155.2
Lac13g0750 . 9 156 Response Regulator Gene Family AT1G19050 54.7 9.4e-38 154.5
Lac13g1253 . 20 150 Response Regulator Gene Family AT1G19050 59.5 1.8e-36 150.2
Lac1g1457 . 8 268 Response Regulator Gene Family AT2G41310 51.8 1.6e-59 226.9
Lac10g2145 . 1 155 Response Regulator Gene Family AT2G41310 75.5 4.7e-59 225.3
Lac13g0750 . 3 182 Response Regulator Gene Family AT2G41310 51.1 9.9e-49 191.0
Lac8g2104 . 8 159 Response Regulator Gene Family AT2G41310 62.5 7.1e-47 184.9
Lac8g1837 . 10 166 Response Regulator Gene Family AT2G41310 59.1 1.5e-44 177.2
Lac13g0242 . 25 158 Response Regulator Gene Family AT2G41310 59.6 3.4e-41 166.0
Lac3g0664 . 30 160 Response Regulator Gene Family AT2G41310 61.9 1.1e-39 161.0
Lac13g1253 . 20 150 Response Regulator Gene Family AT2G41310 57.4 1.9e-39 160.2
Lac2g0939 . 15 163 Response Regulator Gene Family AT2G41310 50.7 3.5e-38 156.0
Lac1g1457 . 8 268 Response Regulator Gene Family AT3G57040 52.8 1.6e-62 236.9
Lac10g2145 . 1 156 Response Regulator Gene Family AT3G57040 78.2 5.3e-61 231.9
Lac13g0750 . 4 155 Response Regulator Gene Family AT3G57040 66.9 7.1e-50 194.9
Lac8g2104 . 1 159 Response Regulator Gene Family AT3G57040 64.8 6.0e-49 191.8
Lac8g1837 . 14 159 Response Regulator Gene Family AT3G57040 62.6 3.1e-45 179.5
Lac13g0242 . 25 158 Response Regulator Gene Family AT3G57040 60.1 3.8e-43 172.6
Lac3g0664 . 26 168 Response Regulator Gene Family AT3G57040 57.5 1.6e-41 167.2
Lac2g0939 . 11 163 Response Regulator Gene Family AT3G57040 54.5 3.5e-41 166.0
Lac13g1253 . 18 150 Response Regulator Gene Family AT3G57040 55.7 4.3e-39 159.1
Lac3g0664 . 16 182 Response Regulator Gene Family AT1G74890 67.8 5.5e-54 208.4
Lac13g0242 . 25 187 Response Regulator Gene Family AT1G74890 59.4 1.2e-45 180.6
Lac1g1457 . 12 149 Response Regulator Gene Family AT1G74890 59.4 1.7e-39 160.2
Lac10g2145 . 8 151 Response Regulator Gene Family AT1G74890 55.6 6.5e-39 158.3
Lac13g0750 . 5 167 Response Regulator Gene Family AT1G74890 54.3 6.5e-39 158.3
Lac8g2104 . 9 152 Response Regulator Gene Family AT1G74890 55.6 3.2e-38 156.0
Lac13g1253 . 20 146 Response Regulator Gene Family AT1G74890 59.1 1.8e-36 150.2
Lac13g1253 . 20 151 Response Regulator Gene Family AT2G40670 69.2 6.8e-47 184.5
Lac10g2145 . 6 153 Response Regulator Gene Family AT2G40670 55.7 8.1e-40 161.0
Lac13g0242 . 26 159 Response Regulator Gene Family AT2G40670 52.6 7.5e-38 154.5
Lac3g0664 . 30 155 Response Regulator Gene Family AT2G40670 62.3 7.5e-38 154.5
Lac1g1457 . 13 156 Response Regulator Gene Family AT2G40670 51.7 8.3e-37 151.0
Lac13g1253 . 3 151 Response Regulator Gene Family AT3G56380 67.3 1.2e-48 190.3
Lac3g0664 . 20 160 Response Regulator Gene Family AT3G56380 60.1 1.2e-40 163.7
Lac10g2145 . 6 153 Response Regulator Gene Family AT3G56380 53.9 8.3e-39 157.5
Lac13g0242 . 26 159 Response Regulator Gene Family AT3G56380 51.9 1.4e-38 156.8
Lac8g1837 . 10 156 Response Regulator Gene Family AT3G56380 53.7 9.2e-38 154.1
Lac1g1457 . 13 156 Response Regulator Gene Family AT3G56380 53.7 3.5e-37 152.1
Lac13g0750 . 3 146 Response Regulator Gene Family AT3G56380 54.5 4.6e-37 151.8
Lac6g0714 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.6e-53 208.4
Lac7g0922 . 17 241 Response Regulator Gene Family AT4G16110 67.5 4.9e-80 296.6
Lac11g0905 . 26 251 Response Regulator Gene Family AT4G16110 66.7 2.4e-79 294.3
Lac2g0557 . 11 234 Response Regulator Gene Family AT4G16110 57.8 3.2e-63 240.7
Lac6g0714 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.4e-58 225.3
Lac3g0194 . 17 249 Response Regulator Gene Family AT4G16110 54.1 1.0e-56 219.2
Lac6g2882 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.5e-52 205.3
Lac3g0194 . 18 386 Response Regulator Gene Family AT4G31920 54.8 1.7e-89 327.8
Lac6g2882 . 17 337 Response Regulator Gene Family AT4G31920 52.7 4.8e-81 299.7
Lac11g0905 . 25 289 Response Regulator Gene Family AT4G31920 52.9 2.0e-71 267.7
Lac7g0922 . 16 270 Response Regulator Gene Family AT4G31920 53.9 2.1e-68 257.7
Lac6g0714 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.6e-62 235.7
Lac2g0557 . 93 256 Response Regulator Gene Family AT1G67710 53.5 1.2e-40 165.2
Lac7g0922 . 99 261 Response Regulator Gene Family AT1G67710 53.8 9.8e-40 162.2
Lac6g2882 . 17 380 Response Regulator Gene Family AT2G25180 52.8 1.2e-85 315.1
Lac7g0922 . 18 290 Response Regulator Gene Family AT2G25180 54.7 6.0e-77 286.2
Lac6g0714 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.9e-68 256.9
Lac7g0922 . 79 308 Response Regulator Gene Family AT2G01760 50.4 3.2e-53 206.5
Lac3g0194 . 79 303 Response Regulator Gene Family AT2G01760 53.9 1.8e-48 190.7
Lac6g0714 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.3e-46 184.5
Lac6g0714 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.6e-62 237.7
Lac1g2096 . 68 214 Response Regulator Gene Family AT5G60100 78.9 2.7e-60 230.3
Lac4g0028 . 58 195 Response Regulator Gene Family AT5G60100 61.6 3.2e-45 180.3
Lac7g0011 . 53 187 Response Regulator Gene Family AT5G60100 60.0 2.4e-40 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005399 2 2 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23130 PF00072 Response_reg 2.60E-21 CL0304 Lac TR