Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0243 ATGGCTTTGCTGCTTCAGCTTCAGCTTCAGCTATGGCTTCTTCATCTCTTCTTCTTTCTCTTCCTTTCTCTTTCCACTGTTTGTTATTGCCAACTCACTCCCCCTCAAAATATCGAAACTTTCTACCCTTCTCCACCACCGTCGTCCCCACTTGACCACCCGCCGTCGTCGTCGTCGCCGTCCACGTCCACCAGGACCATCGTGACGGCGGTGGCCGTCACTGCAGTGGGTATGGCTCTGATTTCGTCCTTGTTCTTCTTCTTGATCCAGAAATATCTGATAAGAAGAAAGCGAAAAACAGAGGAGGTGAATTCGGGTCTGGGTCAAGGTCCGGCCACGCAGCCGGCGATTGCTCAGAGTGAATTTTCGCGTCTTGATGGGAATCTTAAAGGGTTCATTGTGGATGAAAATGGGTTGGATGTGATTTATTGGAAGCGACTTGAAAGAAGGAAATCCAAGAATAGCTTTGATCGGGGTGATGGAGAAGGAAATGTCAAGGGAAATCGAAGCAAAAAGTCAGAGCCTGTTCAAGAAATTCCTCTGCTTCGAGGAAAATCTTCAACTTCACATGTTAAAATTGCACCGGAAGATGAAGAACCCAGTCGGATTACTTCTCCTCCGCCCCCTCCGCCGCCGCCCAAGATTAACCACCCTCCGCCATTTACTGCGAATTCTGTTCAGGCAGTTGGAAAACCATCGAGTGGTTCAGTTCTTTCATCAACAGCACCATCGCAACCGGCGCCAATTCAGGTACCTCCGTCACAATCTCTCATGGCCGTTCCTAACAATAAGAGCACTGTTCCGTCACCGCCGCCGCCAATTCCAGTCAAGACCAATTCAAGACCGCCACCGCCGCCACCTCCCATTCCGGCCAAGACCAATTCAAGACCGCCGCCGCCGCCTCCAATACCAGCCAAGACCAATTCCGCAGCCCCACCTCCCCCTCCAATTCCGGGCAAGGCGAATCCGGCAGCACCACCGCCGCCGCCGCCCAAGGCCGGCGCTTCCAAATTGCCGTTAAGGCCTGCACCTCCAAAAGGGGATAAATCCTCTGGAGAGGCTTCTTCATCAGCCGATAATGGTCAGGTCAAAATGAAGCCTCTGCATTGGGATAAAGTGAACACCGCAAATGCCGATCATTCCATGGTTTGGGACAAAATGAACGGCTCGTTCAAATTTGATGGGGATCTAATGGAAGCTCTGTTTGGTTATGTCGCAACCAACCGGAAATCCCCCCGGAGTGAGGCTAACTCTTCAGCAAACGCCGTCGGCCGGAACTCAGGGCCGTCGCAGATTTTCATTCTTGAACCTAAAAAGTCTCAGAACATAGCCATTGTAGTCAAGTCCTTGACCATTCCTCGCAACGAAATCCTCGATGCGCTCAACGAAGGTCAAGGCCTCGAAACAGAGATTCTTGAAAAGCTCACAAGAATTGCTCTGACCCAAGAAGAAATTTCTCAAATTCTTGCGTACAAAGGAGACCCCCAGAAGCTTGCCGATGCTGAATCTTTCCTTTACCATCTTCTCAATTCGGTTCCATCTGCCTTTACGCGCTTCAATGCGATGCTTTTCCGATTGAATTTCAGCTCAGAGATTCTCCATCTCAAGGAGTGTTTACAAACTCTGGAATCGGCCTGCAAGGAGCTTAGGACTCGAGGGCTGTTTTTGAAACTGCTTGAAGCAATTCTCAAAGCTGGGAATCGGCTGAATGCGGGAACTGCAAGAGGAAATGCCAGAGCTTTCAACCTTACATCTCTGCGGAAGCTCTCTGATGTTAGAAGCACTGATGGGAAAACCACTTTGCTCCACTTTGTGGTGCAAGAAGTCATCAGGGCAGAAGGGAAAAGGTGTGTTTTAAACAGGAACAAGAGCATGAGCCGTAACAGCAGTCTTAGCAGCGACAACAGCTTTAGTAGCTCCGAAAATTCGACTTCAAAAGATGACAGAGTACATGAATATATGATGTTGGGACTGCCAGTGGTGGGAGGCCTGAGCGCTGAGTTCTCTAATGTAAAGAAAGCAGCAGCGATCGACTACGAAAGCTTCGCCAACACCGGATCGTCACTGACCAGCCGTACCACAGAAATCCGGCAGCTTTTGACTCAAATTGGGAGCAATGGAGGTGGTTTTGCGAAAGAAATGAGAGGTTTTCTTGAAGCAGCAGAGGATGAGCTGAAGGTGGTGAGAGAAGAACAGACGAAGGTGATGGAGCTATTGAAGAAGACAACAGAGTATTATCAGGCTGGAAGTTCAAAAGATAAAGAAGCAAATAGGCTTCAAATATTCATCATAGTTAAAGATTTTCTTGAAATGGTAGATCGGGTGTGTGTTGAAATAGCTCGAAATCTCCAGAAGAGGAGATCGTCGGCAGTAAACTTGGGTTCGTATCCGGTTAGATCGAAGGCCATCTTCCCTAACTTGCCGGAAAATTTTATGTCAGACAAGTCCAGAGGAAGTTCTAGTGATTCAGATGATGAATTCTGA 2484 48.67 MALLLQLQLQLWLLHLFFFLFLSLSTVCYCQLTPPQNIETFYPSPPPSSPLDHPPSSSSPSTSTRTIVTAVAVTAVGMALISSLFFFLIQKYLIRRKRKTEEVNSGLGQGPATQPAIAQSEFSRLDGNLKGFIVDENGLDVIYWKRLERRKSKNSFDRGDGEGNVKGNRSKKSEPVQEIPLLRGKSSTSHVKIAPEDEEPSRITSPPPPPPPPKINHPPPFTANSVQAVGKPSSGSVLSSTAPSQPAPIQVPPSQSLMAVPNNKSTVPSPPPPIPVKTNSRPPPPPPPIPAKTNSRPPPPPPIPAKTNSAAPPPPPIPGKANPAAPPPPPPKAGASKLPLRPAPPKGDKSSGEASSSADNGQVKMKPLHWDKVNTANADHSMVWDKMNGSFKFDGDLMEALFGYVATNRKSPRSEANSSANAVGRNSGPSQIFILEPKKSQNIAIVVKSLTIPRNEILDALNEGQGLETEILEKLTRIALTQEEISQILAYKGDPQKLADAESFLYHLLNSVPSAFTRFNAMLFRLNFSSEILHLKECLQTLESACKELRTRGLFLKLLEAILKAGNRLNAGTARGNARAFNLTSLRKLSDVRSTDGKTTLLHFVVQEVIRAEGKRCVLNRNKSMSRNSSLSSDNSFSSSENSTSKDDRVHEYMMLGLPVVGGLSAEFSNVKKAAAIDYESFANTGSSLTSRTTEIRQLLTQIGSNGGGFAKEMRGFLEAAEDELKVVREEQTKVMELLKKTTEYYQAGSSKDKEANRLQIFIIVKDFLEMVDRVCVEIARNLQKRRSSAVNLGSYPVRSKAIFPNLPENFMSDKSRGSSSDSDDEF 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1734633 1737202 + Lag0040039.1 Lac13g0243 591399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0243 827 MobiDBLite consensus disorder prediction 625 648 - -
Lac13g0243 827 ProSiteProfiles Formin homology-2 (FH2) domain profile. 355 798 IPR015425 -
Lac13g0243 827 MobiDBLite consensus disorder prediction 153 367 - -
Lac13g0243 827 MobiDBLite consensus disorder prediction 625 643 - -
Lac13g0243 827 Gene3D Formin, FH2 domain 362 792 IPR042201 -
Lac13g0243 827 Pfam Formin Homology 2 Domain 358 772 IPR015425 -
Lac13g0243 827 PANTHER FORMIN-RELATED 18 826 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Lac13g0243 827 SUPERFAMILY Formin homology 2 domain (FH2 domain) 430 787 - -
Lac13g0243 827 MobiDBLite consensus disorder prediction 265 338 - -
Lac13g0243 827 Coils Coil 711 738 - -
Lac13g0243 827 MobiDBLite consensus disorder prediction 201 219 - -
Lac13g0243 827 MobiDBLite consensus disorder prediction 41 62 - -
Lac13g0243 827 SMART it6_source 355 787 IPR015425 -
Lac13g0243 827 MobiDBLite consensus disorder prediction 153 178 - -
Lac13g0243 827 MobiDBLite consensus disorder prediction 220 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0243 Lac-Chr13:1734633 Lac6g0039 Lac-Chr6:356970 2.90E-114 dispersed
Lac13g0243 Lac-Chr13:1734633 Lac2g1354 Lac-Chr2:11379705 6.30E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0243 K28090 - csv:101208197 1095.88