Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0243 ATGGCTTTGCTGCTTCAGCTTCAGCTTCAGCTATGGCTTCTTCATCTCTTCTTCTTTCTCTTCCTTTCTCTTTCCACTGTTTGTTATTGCCAACTCACTCCCCCTCAAAATATCGAAACTTTCTACCCTTCTCCACCACCGTCGTCCCCACTTGACCACCCGCCGTCGTCGTCGTCGCCGTCCACGTCCACCAGGACCATCGTGACGGCGGTGGCCGTCACTGCAGTGGGTATGGCTCTGATTTCGTCCTTGTTCTTCTTCTTGATCCAGAAATATCTGATAAGAAGAAAGCGAAAAACAGAGGAGGTGAATTCGGGTCTGGGTCAAGGTCCGGCCACGCAGCCGGCGATTGCTCAGAGTGAATTTTCGCGTCTTGATGGGAATCTTAAAGGGTTCATTGTGGATGAAAATGGGTTGGATGTGATTTATTGGAAGCGACTTGAAAGAAGGAAATCCAAGAATAGCTTTGATCGGGGTGATGGAGAAGGAAATGTCAAGGGAAATCGAAGCAAAAAGTCAGAGCCTGTTCAAGAAATTCCTCTGCTTCGAGGAAAATCTTCAACTTCACATGTTAAAATTGCACCGGAAGATGAAGAACCCAGTCGGATTACTTCTCCTCCGCCCCCTCCGCCGCCGCCCAAGATTAACCACCCTCCGCCATTTACTGCGAATTCTGTTCAGGCAGTTGGAAAACCATCGAGTGGTTCAGTTCTTTCATCAACAGCACCATCGCAACCGGCGCCAATTCAGGTACCTCCGTCACAATCTCTCATGGCCGTTCCTAACAATAAGAGCACTGTTCCGTCACCGCCGCCGCCAATTCCAGTCAAGACCAATTCAAGACCGCCACCGCCGCCACCTCCCATTCCGGCCAAGACCAATTCAAGACCGCCGCCGCCGCCTCCAATACCAGCCAAGACCAATTCCGCAGCCCCACCTCCCCCTCCAATTCCGGGCAAGGCGAATCCGGCAGCACCACCGCCGCCGCCGCCCAAGGCCGGCGCTTCCAAATTGCCGTTAAGGCCTGCACCTCCAAAAGGGGATAAATCCTCTGGAGAGGCTTCTTCATCAGCCGATAATGGTCAGGTCAAAATGAAGCCTCTGCATTGGGATAAAGTGAACACCGCAAATGCCGATCATTCCATGGTTTGGGACAAAATGAACGGCTCGTTCAAATTTGATGGGGATCTAATGGAAGCTCTGTTTGGTTATGTCGCAACCAACCGGAAATCCCCCCGGAGTGAGGCTAACTCTTCAGCAAACGCCGTCGGCCGGAACTCAGGGCCGTCGCAGATTTTCATTCTTGAACCTAAAAAGTCTCAGAACATAGCCATTGTAGTCAAGTCCTTGACCATTCCTCGCAACGAAATCCTCGATGCGCTCAACGAAGGTCAAGGCCTCGAAACAGAGATTCTTGAAAAGCTCACAAGAATTGCTCTGACCCAAGAAGAAATTTCTCAAATTCTTGCGTACAAAGGAGACCCCCAGAAGCTTGCCGATGCTGAATCTTTCCTTTACCATCTTCTCAATTCGGTTCCATCTGCCTTTACGCGCTTCAATGCGATGCTTTTCCGATTGAATTTCAGCTCAGAGATTCTCCATCTCAAGGAGTGTTTACAAACTCTGGAATCGGCCTGCAAGGAGCTTAGGACTCGAGGGCTGTTTTTGAAACTGCTTGAAGCAATTCTCAAAGCTGGGAATCGGCTGAATGCGGGAACTGCAAGAGGAAATGCCAGAGCTTTCAACCTTACATCTCTGCGGAAGCTCTCTGATGTTAGAAGCACTGATGGGAAAACCACTTTGCTCCACTTTGTGGTGCAAGAAGTCATCAGGGCAGAAGGGAAAAGGTGTGTTTTAAACAGGAACAAGAGCATGAGCCGTAACAGCAGTCTTAGCAGCGACAACAGCTTTAGTAGCTCCGAAAATTCGACTTCAAAAGATGACAGAGTACATGAATATATGATGTTGGGACTGCCAGTGGTGGGAGGCCTGAGCGCTGAGTTCTCTAATGTAAAGAAAGCAGCAGCGATCGACTACGAAAGCTTCGCCAACACCGGATCGTCACTGACCAGCCGTACCACAGAAATCCGGCAGCTTTTGACTCAAATTGGGAGCAATGGAGGTGGTTTTGCGAAAGAAATGAGAGGTTTTCTTGAAGCAGCAGAGGATGAGCTGAAGGTGGTGAGAGAAGAACAGACGAAGGTGATGGAGCTATTGAAGAAGACAACAGAGTATTATCAGGCTGGAAGTTCAAAAGATAAAGAAGCAAATAGGCTTCAAATATTCATCATAGTTAAAGATTTTCTTGAAATGGTAGATCGGGTGTGTGTTGAAATAGCTCGAAATCTCCAGAAGAGGAGATCGTCGGCAGTAAACTTGGGTTCGTATCCGGTTAGATCGAAGGCCATCTTCCCTAACTTGCCGGAAAATTTTATGTCAGACAAGTCCAGAGGAAGTTCTAGTGATTCAGATGATGAATTCTGA 2484 48.67 MALLLQLQLQLWLLHLFFFLFLSLSTVCYCQLTPPQNIETFYPSPPPSSPLDHPPSSSSPSTSTRTIVTAVAVTAVGMALISSLFFFLIQKYLIRRKRKTEEVNSGLGQGPATQPAIAQSEFSRLDGNLKGFIVDENGLDVIYWKRLERRKSKNSFDRGDGEGNVKGNRSKKSEPVQEIPLLRGKSSTSHVKIAPEDEEPSRITSPPPPPPPPKINHPPPFTANSVQAVGKPSSGSVLSSTAPSQPAPIQVPPSQSLMAVPNNKSTVPSPPPPIPVKTNSRPPPPPPPIPAKTNSRPPPPPPIPAKTNSAAPPPPPIPGKANPAAPPPPPPKAGASKLPLRPAPPKGDKSSGEASSSADNGQVKMKPLHWDKVNTANADHSMVWDKMNGSFKFDGDLMEALFGYVATNRKSPRSEANSSANAVGRNSGPSQIFILEPKKSQNIAIVVKSLTIPRNEILDALNEGQGLETEILEKLTRIALTQEEISQILAYKGDPQKLADAESFLYHLLNSVPSAFTRFNAMLFRLNFSSEILHLKECLQTLESACKELRTRGLFLKLLEAILKAGNRLNAGTARGNARAFNLTSLRKLSDVRSTDGKTTLLHFVVQEVIRAEGKRCVLNRNKSMSRNSSLSSDNSFSSSENSTSKDDRVHEYMMLGLPVVGGLSAEFSNVKKAAAIDYESFANTGSSLTSRTTEIRQLLTQIGSNGGGFAKEMRGFLEAAEDELKVVREEQTKVMELLKKTTEYYQAGSSKDKEANRLQIFIIVKDFLEMVDRVCVEIARNLQKRRSSAVNLGSYPVRSKAIFPNLPENFMSDKSRGSSSDSDDEF 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1734633 1737202 + Lag0040039.1 Lac13g0243 591399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0243 827 MobiDBLite consensus disorder prediction 625 648 - -
Lac13g0243 827 ProSiteProfiles Formin homology-2 (FH2) domain profile. 355 798 IPR015425 -
Lac13g0243 827 MobiDBLite consensus disorder prediction 153 367 - -
Lac13g0243 827 MobiDBLite consensus disorder prediction 625 643 - -
Lac13g0243 827 Gene3D Formin, FH2 domain 362 792 IPR042201 -
Lac13g0243 827 Pfam Formin Homology 2 Domain 358 772 IPR015425 -
Lac13g0243 827 PANTHER FORMIN-RELATED 18 826 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Lac13g0243 827 SUPERFAMILY Formin homology 2 domain (FH2 domain) 430 787 - -
Lac13g0243 827 MobiDBLite consensus disorder prediction 265 338 - -
Lac13g0243 827 Coils Coil 711 738 - -
Lac13g0243 827 MobiDBLite consensus disorder prediction 201 219 - -
Lac13g0243 827 MobiDBLite consensus disorder prediction 41 62 - -
Lac13g0243 827 SMART it6_source 355 787 IPR015425 -
Lac13g0243 827 MobiDBLite consensus disorder prediction 153 178 - -
Lac13g0243 827 MobiDBLite consensus disorder prediction 220 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0243 K28090 - - csv:101208197 1095.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0243 Lac-Chr13:1734633 Lac6g0039 Lac-Chr6:356970 2.90E-114 dispersed
Lac13g0243 Lac-Chr13:1734633 Lac2g1354 Lac-Chr2:11379705 6.30E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g795 . . . . . Bpe10g00820 . Bma15g00202 Cmo04g01676 . . . . . Sed08g1729 . Cpe01g01416 Bhi07g01666 Tan04g1167 Cmetu03g1719 Lac13g0243 Hepe10g1681 . . Cla05g02507 Cam05g2691 Cec05g2724 Cco05g2759 Clacu05g2694 Cmu05g2548 Cre05g2663 . . Cone6ag0623 Cone9ag0638 Lsi04g00506 Csa05g02377 Chy10g00942 Cme10g00485 . . . . Bpe11g01744 . . . . . . Cma04g01601 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g1726 . 454 930 FH2 protein (formin) Gene Family AT3G25500 66.7 4.6e-165 579.7
Lac9g1078 . 458 881 FH2 protein (formin) Gene Family AT3G25500 63.7 1.9e-142 504.6
Lac3g2794 . 493 894 FH2 protein (formin) Gene Family AT3G25500 51.2 2.0e-104 378.3
Lac11g2477 . 616 1074 FH2 protein (formin) Gene Family AT2G43800 60.5 1.0e-144 511.9
Lac9g1078 . 458 893 FH2 protein (formin) Gene Family AT2G43800 55.0 1.3e-123 441.8
Lac9g2080 . 291 645 FH2 protein (formin) Gene Family AT4G15200 52.4 3.8e-55 213.4
Lac2g1354 . 454 603 FH2 protein (formin) Gene Family AT4G15200 64.9 2.3e-47 187.6
Lac2g1354 . 458 905 FH2 protein (formin) Gene Family AT5G54650 67.5 2.5e-167 587.0
Lac9g2080 . 507 969 FH2 protein (formin) Gene Family AT5G54650 62.7 1.5e-159 561.2
Lac11g2477 . 627 1029 FH2 protein (formin) Gene Family AT5G54650 50.5 3.3e-103 374.0
Lac9g1078 . 8 900 FH2 protein (formin) Gene Family AT5G67470 57.6 9.5e-236 814.3
Lac11g2477 . 608 1072 FH2 protein (formin) Gene Family AT5G67470 58.8 1.2e-134 478.4
Lac13g1726 . 491 926 FH2 protein (formin) Gene Family AT5G67470 62.2 3.4e-132 470.3
Lac3g2794 . 491 896 FH2 protein (formin) Gene Family AT5G67470 51.0 7.8e-105 379.4
Lac13g0243 . 347 826 FH2 protein (formin) Gene Family AT1G59910 51.3 2.7e-124 444.1
Lac9g1078 . 482 858 FH2 protein (formin) Gene Family AT5G48360 50.1 4.7e-90 330.1
Lac2g1354 . 466 877 FH2 protein (formin) Gene Family AT3G05470 51.0 5.3e-106 383.3
Lac9g1078 . 462 857 FH2 protein (formin) Gene Family AT3G05470 51.2 7.7e-105 379.4
Lac11g2471 . 916 1227 FH2 protein (formin) Gene Family AT1G42980 50.5 7.4e-68 255.0
Lac11g2471 . 1 1234 FH2 protein (formin) Gene Family AT1G31810 65.9 0.0e+00 1222.2
Lac3g0591 . 1369 1690 FH2 protein (formin) Gene Family AT5G07650 73.9 2.0e-128 457.6
Lac10g0118 . 982 1270 FH2 protein (formin) Gene Family AT5G07650 70.2 1.4e-110 398.3
Lac2g0546 . 1072 1400 FH2 protein (formin) Gene Family AT5G07650 62.9 8.7e-108 389.0
Lac3g0209 . 935 1253 FH2 protein (formin) Gene Family AT5G07650 62.2 1.1e-107 388.7
Lac11g2471 . 900 1231 FH2 protein (formin) Gene Family AT5G07650 59.6 1.1e-107 388.7
Lac3g0591 . 1296 1680 FH2 protein (formin) Gene Family AT5G07770 69.7 3.4e-141 499.6
Lac10g0118 . 903 1270 FH2 protein (formin) Gene Family AT5G07770 63.4 5.6e-120 429.1
Lac3g0209 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 1.1e-115 414.8
Lac2g0546 . 996 1392 FH2 protein (formin) Gene Family AT5G07770 57.3 1.9e-115 414.1
Lac11g2471 . 836 1225 FH2 protein (formin) Gene Family AT5G07770 55.8 5.5e-115 412.5
Lac2g0546 . 988 1400 FH2 protein (formin) Gene Family AT3G32400 75.8 7.2e-169 591.3
Lac3g0209 . 842 1255 FH2 protein (formin) Gene Family AT3G32400 66.0 2.7e-147 519.6
Lac11g2471 . 836 1230 FH2 protein (formin) Gene Family AT3G32400 66.0 3.7e-141 499.2
Lac3g0591 . 1296 1690 FH2 protein (formin) Gene Family AT3G32400 65.5 4.9e-141 498.8
Lac10g0118 . 875 1263 FH2 protein (formin) Gene Family AT3G32400 59.2 2.7e-123 439.9
Lac2g0546 . 1 1400 FH2 protein (formin) Gene Family AT2G25050 50.4 0.0e+00 1156.7
Lac3g0209 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 51.9 6.4e-293 1004.6
Lac3g0591 . 1297 1690 FH2 protein (formin) Gene Family AT5G07780 63.0 5.1e-124 442.2
Lac10g0118 . 906 1270 FH2 protein (formin) Gene Family AT5G07780 56.4 1.1e-102 371.3
Lac11g2471 . 837 1226 FH2 protein (formin) Gene Family AT5G07780 52.7 5.5e-102 369.0
Lac2g0546 . 997 1393 FH2 protein (formin) Gene Family AT5G07780 53.2 2.7e-101 366.7
Lac3g0209 . 865 1246 FH2 protein (formin) Gene Family AT5G07780 53.8 7.9e-101 365.2
Lac3g0591 . 1 1699 FH2 protein (formin) Gene Family AT5G07740 63.7 0.0e+00 1115.1
Lac3g0591 . 1368 1697 FH2 protein (formin) Gene Family AT5G07760 73.5 9.2e-127 452.2
Lac10g0118 . 981 1270 FH2 protein (formin) Gene Family AT5G07760 70.7 1.7e-109 394.8
Lac3g0209 . 934 1253 FH2 protein (formin) Gene Family AT5G07760 64.2 8.6e-109 392.5
Lac2g0546 . 1071 1408 FH2 protein (formin) Gene Family AT5G07760 62.9 4.3e-108 390.2
Lac11g2471 . 910 1231 FH2 protein (formin) Gene Family AT5G07760 61.3 3.1e-106 384.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007048 1 1 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37