Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0251 ATGCAAGGAGCTGAGGAGGAGGACAGTGCAATATCCAAGGAGACAATCAAGAAACGGGACCTAGAGGAAGAACAGGCCAGAAGGTCAGGCCAAGGCTGGAGGGATCGAGCCTTGGCCCAACCCATATGGTCGGCCCCGACCCACTCGCTAGTCCTTCCGCCTCCGTTTCGGTCCCTGATGCTCCTGACCTCCCAGCTTTTTGACTTAAGCATTAGAGGCGGTGTGACAAGCACCACACCGGTGTGCAGGTTTATTGTTTTTCAGGTCACGTCTTTCCCTTCTCATACAAATTTATCGTGGGTGGCACGTGAAGGTCAGTGTAAAGTCCTCGACATGAACGCCTCCCGCACGTGCTCGCTCTGTGGGAACAATGGCCACAACTCCCGCACGTGTCCAGAGGGGGACGGCGGCGGAGGAATCATGCTGTTTGGGGTGAGGGTGACGGAGGGAAGTAGCTCGTTTAGGAAGAGTGTTAGTATGAATAATCTCTGCCAATACGACCAGCCGCAGAGTCAGGACTCGAATAACGCCGATGCTGGATATGCTTCTGACGACGTCGTTCACCCATCTGACCGTTGCCGCGGGAGAAAAAGAGGGATTCCGTGGACGGAGGAAGAGCATCGGCTGTTTCTGTTGGGATTACAGAAGGTTGGGAAGGGAGATTGGAGAGGGATTTCGAGGAATTTTGTGAAGACACGTACGCCGACTCAGGTGGCCAGTCATGCTCAGAAATACTTTCTCCGCCGGAATAATTTGAATCGCCGCCGCCGTAGATCCAGCCTTTTCGATATCACCACTGATACATTCACGAGCTCCTCAATGGAAGACGATTTGGTATTTTCCGGCCACGATGCCATGCCACCACCGCTCCCACCGGCGCAGCCACAGAAAGACAGCAAGCCCGGAAACTTCCCTGTGAAAATTCATCCAGCAAAACCACCTCCTGCCGCCGTGGCCGTCGGCGGCGAAGACAGAAACGCCGTGGAGAGTACTCTAACACCGCGTTCATCGAATTCTTCGAAGACGAGCAGTTCTAAAATCATCCGTCCAATGCCAATGCTTCCTCTATCTCCATATCCAAAATTCGCTCAGTTGAACATAAACGAGAGAACGCCAGAAGACCCTTTGCCTCTAACTTTGAAGCTCTCAACTCCACACTCCGAGGGGAAGTCACCGGCGGCGGCGGCGGCTTCACAGTCTTCCGGTAGTTTCCAGACAATGTCCGGCGGCGGTGACGGCATAGACATTGTCAGTGTTGCTTGA 1263 53.92 MQGAEEEDSAISKETIKKRDLEEEQARRSGQGWRDRALAQPIWSAPTHSLVLPPPFRSLMLLTSQLFDLSIRGGVTSTTPVCRFIVFQVTSFPSHTNLSWVAREGQCKVLDMNASRTCSLCGNNGHNSRTCPEGDGGGGIMLFGVRVTEGSSSFRKSVSMNNLCQYDQPQSQDSNNADAGYASDDVVHPSDRCRGRKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNLNRRRRRSSLFDITTDTFTSSSMEDDLVFSGHDAMPPPLPPAQPQKDSKPGNFPVKIHPAKPPPAAVAVGGEDRNAVESTLTPRSSNSSKTSSSKIIRPMPMLPLSPYPKFAQLNINERTPEDPLPLTLKLSTPHSEGKSPAAAAASQSSGSFQTMSGGGDGIDIVSVA 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1793245 1796060 + Lag0040047.1 Lac13g0251 591407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0251 420 SUPERFAMILY Homeodomain-like 195 251 IPR009057 -
Lac13g0251 420 MobiDBLite consensus disorder prediction 1 33 - -
Lac13g0251 420 MobiDBLite consensus disorder prediction 280 353 - -
Lac13g0251 420 ProSiteProfiles Zinc finger CCHC-type profile. 118 133 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac13g0251 420 Gene3D - 200 252 - -
Lac13g0251 420 MobiDBLite consensus disorder prediction 165 179 - -
Lac13g0251 420 ProSiteProfiles Myb-like domain profile. 194 246 IPR001005 -
Lac13g0251 420 MobiDBLite consensus disorder prediction 7 31 - -
Lac13g0251 420 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 248 IPR006447 GO:0003677(InterPro)
Lac13g0251 420 MobiDBLite consensus disorder prediction 393 408 - -
Lac13g0251 420 SMART sant 198 248 IPR001005 -
Lac13g0251 420 Coils Coil 4 24 - -
Lac13g0251 420 MobiDBLite consensus disorder prediction 165 188 - -
Lac13g0251 420 MobiDBLite consensus disorder prediction 371 420 - -
Lac13g0251 420 CDD SANT 201 246 IPR001005 -
Lac13g0251 420 ProSiteProfiles SANT domain profile. 202 250 IPR017884 -
Lac13g0251 420 PANTHER TRANSCRIPTION FACTOR KUA1 115 352 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
Lac13g0251 420 MobiDBLite consensus disorder prediction 329 347 - -
Lac13g0251 420 Pfam Myb-like DNA-binding domain 201 246 IPR001005 -
Lac13g0251 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 250 IPR017930 -
Lac13g0251 420 FunFam transcription factor MYB1R1 200 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0251 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0251 Lac-Chr13:1793245 Lac5g0374 Lac-Chr5:3949435 8.00E-44 dispersed
Lac10g0401 Lac-Chr10:3159772 Lac13g0251 Lac-Chr13:1793245 1.10E-47 wgd
Lac13g0251 Lac-Chr13:1793245 Lac3g0659 Lac-Chr3:5121018 6.50E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013797 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23132 PF00249 Myb_DNA-binding 2.70E-10 CL0123 Lac TF