Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0254 ATGAGTGGATGGGATAGGGTTAGACCATCGACTTCGAGATTTGGCCGCGGCAATTCTGCAATGCCCGAGAGGACCTCCTCCACTACTACTACGGTTCGACTCGGCCGAGTCCAGCCGCAGGCCCCCGGACATCGCACCATCTTCTGCAATGATCGCGACGCCAATCTCCTTGTCAAATTCAAGGGGAATTCAGTTTCGACGACTAAGTATAACTTCTTCACCTTCTTTCCGAAAGGGTTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACAATCTCAATCTTATCCACCACACCCATCAGTCCTGTGCATCCAATTACAAATGTGGTCCCTTTAAGTCTGGTTCTACTCGTCTCTCTCATTAAAGAAGCATTTGAGGACTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTTGTAGACGTGCTGCAAGATCAAAAGTGGGAGAGCGTACCTTGGAAAAGGTTGCAGGTTGGAGACATTGTTAGGAGCGTACAGTTGTCAATGTCATTGAATGAAGGAAATATAAGGTGGATGGTGGGTATAGCCGGAGTCGTGCTAGGTTCGGCAGGATGGGTTTTTCCTGCGGATCTTCTTTTCCTTGCTAGTACAAATCCAGATGGTGTATGCTACATTGAGACTGCTAACCTGGACGGGGAGACAAATTTAAAGATTAGAAAGGCCCTGGAAAAGACCTGGGATTACATGACTCCAGAGAAGGCGTCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACCGGCAATGTTATTATTCAGAAACAAACATTACCTCTCAGCCCAAACCAACTTTTATTGCGAGGGTGCAGTCTCAGGAACACGGAGTATATTGTTGGGGCTGTTATTTTTACTGGCCATGAAACAAAGGGTGGCCCTGGTGGTAAGAGCTTGGATCTTTTGGAGATATCCTCTCATGCTCTGTGTTCCACCATTAGTGGAGTTTTTGTAAACGAAAAGTACTACTACTTAGCTCTTGATAAGGGAGGGGAAAACCAATTTAACCCACGCAACCGATTCCTGGTTGTCATTCTGACCATGTTTACCCTGATTACTCTGTATTCGACAATCATTCCTATTTCTCTTTATGTTTCCATTGAGATGATCAAATTTATTCAATCGACACAATATATCAATAAGGATCTAAGTATGTTCCATGCTGAAAGCAATACCCCAGCGTTGGCTAGAACTTCCAATTTGAACGAAGAACTGGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATCTAATGGAGTTCTTTAAGTGTTCAATTGGTGGAGAGATTTATGGCACTGGTATCACTGAAATAGAGAGGGGAATTGCTGAGCAGAATGGATTGAAAGTGGACGAGGAGCACAAATCAGCCAATGCTGTACAAGAAAAGGGATTTAATTTTGATGATGCTAGGCTTATGAGAGGAGCATGGAGAAATGAGCCCAACTCTGATCTTTGTAAGGAATTTTTTAGATGCCTTGCTATTTGCCATACCGTACTCCCTGAGGGCGATGAATCCCCAGAAAAGATCACATATCAAGCAGCATCACCTGATGAGGCTGCCTTGGTAACTGCTGCTAAAAACTTTGGCTTCTTCTTTTACAGGCGTACACCTACTACAATATATGTTCGTGAATCTCATGTTGAGAAGATGGGTAAAATCCTAGATGTTTCTTATGAAATTCTCAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCTGTTGTGTGTCGTTATTCCGATGGTAGACTTGTCTTGTACTGCAAGGGCGCTGATACCGTAATATATGAGAGATTGACTGGTGGAAATGACGATCTGAAGAATGTAACTAGGGAACACTTGGAGAAATTTGGATCTTCTGGTTTGAGAACCCTATGCCTTGCTTATAGAGATTTGCATCCTGACGTTTATGAAAGCTGGAATGAGAAATTCATTCAAGCTAAGTCTTCGTTGAGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTTATAGAGAAAGACCTTATTTTGATTGGCTGTACTGCTATAGAAGATAAGCTTCAAGAAGGAGTACCAAACTGTATACAGACACTTTCTAGAGCTGGTATCAAGATTTGGGTGCTAACAGGAGACAAGATGGAAACTGCTATTAATATAGCTTATGCTTGCAATTTAATAAACAATGAAATGAAACAATTTATTATCAGTTCAGAAACAGATGCAATCAGAGAAGTTGAAAACAGGGGTGACCAAGTAGAACTTGCACGTTTTATTAGAGAAGAAGTAAAAAAGGAATTGAAGAAATGTCTTGAGGAAGCGCAGCAGTGTTTACAGTCTGTGTCTCCACCAAAATTAGCACTTGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACTTTACTAAATTTGAGCTTGAATTGTAGTTCAGTTGTTTGCTGCCGGGTTTCTCCATTGCAGAAAGCGCAGGTGACAAGTTTGGTAAAGAAAGGTGCACAGAAAATAACACTTAGTATTGGTGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAAGAGGGGATGCAAGCAGTGATGGCTAGTGATTTTGCTATTGCCCAGTTTCGCTTTCTCACAGATTTACTTCTTGTGCATGGGCGATGGTCATATCTTAGAATATGCAAGGTTGTCACATACTTCTTTTACAAGAATCTTACGTTCACTCTAACTCAGTTTTGGTTCACCTTTCAAACTGGATTTTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCATTATATAATGTCATATTTACCGCCCTACCTGTAATAATTGTCGGACTATTTGACAAGGATGTCAGTGCTTCCCTATCCAAAAAGTACCCTGAGCTCTATAGAGAGGGAATAAGAAATGTGTTTTTCAAGTGGAGAGTTGTGACAACTTGGGCTTTCTTTTCCATCTACCAATCTTTAGTCTTCTATTATTTTGTAACCGCTTCCAGTTCCAGTAGTCAATCGTCATCTGGCAAGGTCTTTGGCCTTTGGGATATTAGCACGATGACTTTCACGTGCATTGTGGTGACTGTGAATTTGCGGCTGCTTATGATCTGCAATTCAATTACCAGGTGGCATTATATTACAGTTGGGGGAAGCATTTTAGCATGGTTCCTATTTATATTCTTATATTCTGGTATTATGACGCCACACGATAGGCAGGAAAATGTATATTTCGTCATATATGTCTTAATGAGTACATTATACTTTTACGTAGCTGTCCTCCTTGTACCCGTTGTTGCACTTCTTTGTGATTTCGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTATGATTATCAGATAGTTCAAGAAATTCATAGACATGAACCTGAAGGTAGAAGAACGTCAGGATTTCTGGAGATTCAGAACCATCTTACACCGGAAGAGGCAAGAAGCTATGCCATGTCTCAACTCCCACGAGAGTTATCAAAGCACACTGGCTTTGCTTTCGACTCACCGGGCTACGAGTCATTTTTTGCTGCACAGCTTGGTATTTATGCCCCACAGAAGGCATGGGATGTTGCCAGGAGAGCCAGTGTGAAGTCAAGACCTAAGATTAGGGAAAAGAAATGA 3702 41.41 MSGWDRVRPSTSRFGRGNSAMPERTSSTTTTVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLVDVLQDQKWESVPWKRLQVGDIVRSVQLSMSLNEGNIRWMVGIAGVVLGSAGWVFPADLLFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYMTPEKASEFKGEVQCEQPNNSLYTFTGNVIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKGGPGGKSLDLLEISSHALCSTISGVFVNEKYYYLALDKGGENQFNPRNRFLVVILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLSMFHAESNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGTGITEIERGIAEQNGLKVDEEHKSANAVQEKGFNFDDARLMRGAWRNEPNSDLCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKILDVSYEILNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVIYERLTGGNDDLKNVTREHLEKFGSSGLRTLCLAYRDLHPDVYESWNEKFIQAKSSLRDREKKLDEVAELIEKDLILIGCTAIEDKLQEGVPNCIQTLSRAGIKIWVLTGDKMETAINIAYACNLINNEMKQFIISSETDAIREVENRGDQVELARFIREEVKKELKKCLEEAQQCLQSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPELYREGIRNVFFKWRVVTTWAFFSIYQSLVFYYFVTASSSSSQSSSGKVFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFLFIFLYSGIMTPHDRQENVYFVIYVLMSTLYFYVAVLLVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPEGRRTSGFLEIQNHLTPEEARSYAMSQLPRELSKHTGFAFDSPGYESFFAAQLGIYAPQKAWDVARRASVKSRPKIREKK 1233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1814013 1828257 - Lag0040050.1 Lac13g0254 591410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0254 1233 SUPERFAMILY HAD-like 417 904 IPR036412 -
Lac13g0254 1233 SFLD p-type atpase 411 912 IPR044492 -
Lac13g0254 1233 FunFam Phospholipid-transporting ATPase 171 309 - -
Lac13g0254 1233 Gene3D - 695 901 IPR023214 -
Lac13g0254 1233 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 700 IPR023299 GO:0000166(InterPro)
Lac13g0254 1233 Gene3D - 125 311 - -
Lac13g0254 1233 Pfam Cation transport ATPase (P-type) 525 623 - -
Lac13g0254 1233 MobiDBLite consensus disorder prediction 12 30 - -
Lac13g0254 1233 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 1139 IPR023298 -
Lac13g0254 1233 Coils Coil 776 796 - -
Lac13g0254 1233 PRINTS P-type cation-transporting ATPase superfamily signature 861 880 - -
Lac13g0254 1233 PRINTS P-type cation-transporting ATPase superfamily signature 429 443 - -
Lac13g0254 1233 MobiDBLite consensus disorder prediction 1 30 - -
Lac13g0254 1233 Pfam Phospholipid-translocating P-type ATPase C-terminal 889 1139 IPR032630 -
Lac13g0254 1233 Gene3D - 541 694 IPR023299 GO:0000166(InterPro)
Lac13g0254 1233 SUPERFAMILY Calcium ATPase, transduction domain A 143 308 IPR008250 -
Lac13g0254 1233 CDD P-type_ATPase_APLT_Dnf-like 62 1021 - -
Lac13g0254 1233 Pfam Phospholipid-translocating ATPase N-terminal 47 111 IPR032631 -
Lac13g0254 1233 SFLD C1.7: P-type atpase like 411 912 - -
Lac13g0254 1233 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 31 1152 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER)
Lac13g0254 1233 FunFam Phospholipid-transporting ATPase 694 901 - -
Lac13g0254 1233 NCBIfam HAD-IC family P-type ATPase 834 940 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac13g0254 1233 FunFam Phospholipid-transporting ATPase IC 426 438 - -
Lac13g0254 1233 ProSitePatterns E1-E2 ATPases phosphorylation site. 431 437 IPR018303 -
Lac13g0254 1233 NCBIfam phospholipid-translocating P-type ATPase 198 1147 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lac13g0254 1233 FunFam Phospholipid-transporting ATPase 538 693 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1413 Lac-Chr10:13327082 Lac13g0254 Lac-Chr13:1814013 6.50E-27 dispersed
Lac13g0254 Lac-Chr13:1814013 Lac13g0439 Lac-Chr13:3104800 4.50E-252 dispersed
Lac13g0254 Lac-Chr13:1814013 Lac8g1167 Lac-Chr8:24782303 3.10E-253 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0254 K14802 - csv:101207069 2204.87