Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0259 ATGGCAACAGAGGACTTGAAGCTTCTGGGTGCGTGGGCTAGTCCATTTGTGATCAGGGTCAGAATCGCCCTCAACATCAAATCTCTAAACTATGAATTTCTTCAGGAAACGCTCGGATCCAAGAGCCAACTCCTCCTCGAATCCAACCCTGTTCACAAGAAAATCCCTGTTCTCATTCACCAAAATAACCCCATCGCCGAATCCTTGATCATCGTTCAGTATATCGACGAAGTCTGGCCCTCTGCTCCTTCCATCCTTCCCTCCGATCCTTACGATCGCGCCATGGCTCGATTTTGGGCTGCCTTTGCCGACGACAAGTTTTTCCCACCGATGCGGGCGACGATGGGCGCAGAAGAGGAAGTGAAAAGGGGGCTCATCGATCAAGTGGTGGAAGCGATCGGTTTATTGGAAGAAGGTTTTGGGAAGCTGAGCAGAGGAAAGGCATTCTTCAATGGAGACAGTATTGGGTTTCTGGACATTGCTTTTGGGTCGTTTTTAGGATGGCTGAGAGTGACTGAAGTATCGAATGGCGTGAAACTGATCGACGGAAAGAAGACTCCAGGGCTGGCCAGATGGGCTGAGAAGTTCTGTGCAGATGGCGCTGTCAAAGATGTGATGCCCGAAACTGAAAAGCTTCTGGAGTTTGCTAAGGTTATTGAAGCCAAAATGAAGGGAGAGCATCCAAAATAG 690 49.28 MATEDLKLLGAWASPFVIRVRIALNIKSLNYEFLQETLGSKSQLLLESNPVHKKIPVLIHQNNPIAESLIIVQYIDEVWPSAPSILPSDPYDRAMARFWAAFADDKFFPPMRATMGAEEEVKRGLIDQVVEAIGLLEEGFGKLSRGKAFFNGDSIGFLDIAFGSFLGWLRVTEVSNGVKLIDGKKTPGLARWAEKFCADGAVKDVMPETEKLLEFAKVIEAKMKGEHPK 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1864980 1865768 + Lag0040055.1 Lac13g0259 591415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0259 229 Pfam Glutathione S-transferase, C-terminal domain 122 194 - -
Lac13g0259 229 FunFam Glutathione S-transferase U9 86 226 - -
Lac13g0259 229 Gene3D Glutaredoxin 1 85 - -
Lac13g0259 229 FunFam Glutathione S-transferase GSTU6 1 86 - -
Lac13g0259 229 CDD GST_C_Tau 90 219 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Lac13g0259 229 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 217 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Lac13g0259 229 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Lac13g0259 229 SFLD Main (cytGST) 2 225 - -
Lac13g0259 229 SUPERFAMILY GST C-terminal domain-like 77 220 IPR036282 -
Lac13g0259 229 CDD GST_N_Tau 6 79 - -
Lac13g0259 229 SFLD Main.3: Omega- and Tau-like 2 225 IPR045073 -
Lac13g0259 229 SUPERFAMILY Thioredoxin-like 5 108 IPR036249 -
Lac13g0259 229 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Lac13g0259 229 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 215 IPR010987 -
Lac13g0259 229 Gene3D - 86 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0259 Lac-Chr13:1864980 Lac1g1947 Lac-Chr1:41060088 3.60E-46 dispersed
Lac13g0259 Lac-Chr13:1864980 Lac10g0068 Lac-Chr10:564245 5.90E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0259 K00799 - vvi:100245065 315.849