Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0261 ATGCCTTCTCCATCTTCATCTCTTTCTGTTTCCGCCATTGTTGTCTTCTTCCTCGAGCTCTGTCATCTGTTTTCAGCGGATGGGCAGGTTGCATCTTTGAGGATTCCTTGTCCGCCTTTCTCTTCCAAACCCGTTTTCCCATTTTCCTCTGAGCCTGGTTATGGCCATCCTTCTTTTCAGGTACGTTGCTCTTCTCCCCACTCTGTTCTTTCCATTAATGGAGTTTCTTATTCTCTGTTGAGTTTCAATACGAGCTCCACCACTCTCCGTCTTTCTCCTCTTCCACTCAATGTCACTCCCACTGTCAGAGAATCGAACCACAGCTGTTTTTCTGCTCGTTTCTCTTCCATTCCGAGCCGTTCGATTAATCTCTCGGGCTCCCCGTTTAGAATCTCAGATGGGTATTGCTCTAGACTCTCTCTTCTTAGCCCCTGTTCGCGTCCGAGTCTACCCAATTGCAGCCATTGTCCTTGGGAATGCAGTCTTATCAAGAAACCAGTTAATTTGCTCGATGGATGCGGCGTCGAGCATCAGTCCTTCTCGGAGCAAGGTTGTCAGGGCGAGGTCTTGGAGTATTTGGATAAATTTCTGAAATTGGGGCTTGATGTCGAGTGGGATACAGATCAGGACCCTTACTTTATCAAGTGTAATGATTGTGAAGCTAAAAATGGTGATTGTGGTTTCAATTCCTCAGACCCAGATAGGCAATTCATTTGCTATCGTGCTCAAACCCGACATCATGTTCAAACTCGATACGCATACCCTAATAGAATCGCGATTTTGTCCTCTGTATTCGCGTTGATGTGCTTGTTATTGGTTATTGCGGTGACGATGGCTTTTTTCAGGTCGAGATGGTTGAGATCCCTCGCCATTGAAGTAGACCCCACAACCCAGTTCCTCAGTCGTCATCGTTCACCGAATCTTCTCCCACCAGTTTTCCCCTACGAAGAACTCGAATCCTCTACTAATCGATTCGACCCCAAGAGGAAACTGGGCGACGGTGGATTTGGGTCTGTTTATTTGGGTCAGCTCAACGATGGCCGATTAGTGGCCGTGAAGTATCTTCACAAGCACCACGCCGCCGCCGCCGCCCCCTCCGGCAGGGCTTTCTTCACCAAGTCCTTCTGTAACGAAATCTTGATTCTTTCTTCGATTAATCACCCAAATCTCGTGAGGTTGCATGGGTATTGTAGCGACCCGAGAGGGCTTATTCTTGTCTATGATTATGTCCCGAATGGGACGCTCGCCGACCATCTCCATGGCCCTAAGAGCTTGTACCGGAAGGGATCTCTGAACTGGCAAGTTAGGATTGATATTGCTCTGCAAATCGCCATGGCTATGGAGTATTTGCATTTCTCTGTCGTGCCGCCGATTGTTCACAGAGACATTACCTCTTCCAATATTTTTGTGGAGAAAGATATGAGAATCAAAGTTGGGGATTTTGGGCTTTCGAGGCTGCTGGTTTTCTCTGATACGACGTCGTCTTCATCTGGGTATGTCTGCACCGGACCACAGGGGACACCAGGTTACTTGGATCCGGATTACCACCGGTCGTTCCGGTTGACGGAGAAGAGTGACGTGTACAGCTTCGGAGTTGTGTTATTGGAGCTGATTTCTGGTCTGAAAGCAGTGGATCAGAGTCGAGAGAGAAGAGAAATGGCGCTGGCGGATCTGGTAGTCTCGAAGATCCAAATGGGTCAGCTTCATCAGGTGGTGGACTCCGTTTTGGGTATCGACGGCGAAGTAATCGACGGCGTTGAGGCGGTGGCGGAGCTGGCGTTCCGGTGCGTGGCGGCGGACAAGGACGACCGCCCCGACGCCAAGGAGATCGTGGAGGAGCTCCGGCGGATCCGGAACTGCACACGTGGAGGGGTCCGGTCGTCGATTTCAAACGTGAGTGCTGACGTGGCTAGAAGTTGA 1920 50.0 MPSPSSSLSVSAIVVFFLELCHLFSADGQVASLRIPCPPFSSKPVFPFSSEPGYGHPSFQVRCSSPHSVLSINGVSYSLLSFNTSSTTLRLSPLPLNVTPTVRESNHSCFSARFSSIPSRSINLSGSPFRISDGYCSRLSLLSPCSRPSLPNCSHCPWECSLIKKPVNLLDGCGVEHQSFSEQGCQGEVLEYLDKFLKLGLDVEWDTDQDPYFIKCNDCEAKNGDCGFNSSDPDRQFICYRAQTRHHVQTRYAYPNRIAILSSVFALMCLLLVIAVTMAFFRSRWLRSLAIEVDPTTQFLSRHRSPNLLPPVFPYEELESSTNRFDPKRKLGDGGFGSVYLGQLNDGRLVAVKYLHKHHAAAAAPSGRAFFTKSFCNEILILSSINHPNLVRLHGYCSDPRGLILVYDYVPNGTLADHLHGPKSLYRKGSLNWQVRIDIALQIAMAMEYLHFSVVPPIVHRDITSSNIFVEKDMRIKVGDFGLSRLLVFSDTTSSSSGYVCTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLKAVDQSRERREMALADLVVSKIQMGQLHQVVDSVLGIDGEVIDGVEAVAELAFRCVAADKDDRPDAKEIVEELRRIRNCTRGGVRSSISNVSADVARS 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1873573 1875492 - Lag0040057.1 Lac13g0261 591417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0261 639 ProSiteProfiles Protein kinase domain profile. 325 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0261 639 FunFam Putative serine/threonine-protein kinase At1g18390 family 301 409 - -
Lac13g0261 639 Pfam Protein kinase domain 327 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0261 639 Pfam Wall-associated receptor kinase C-terminal 188 241 IPR032872 -
Lac13g0261 639 SUPERFAMILY Protein kinase-like (PK-like) 305 614 IPR011009 -
Lac13g0261 639 CDD STKc_IRAK 331 617 - -
Lac13g0261 639 Gene3D Phosphorylase Kinase; domain 1 300 409 - -
Lac13g0261 639 ProSitePatterns Tyrosine protein kinases specific active-site signature. 458 470 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0261 639 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524(InterPro)
Lac13g0261 639 Gene3D Transferase(Phosphotransferase) domain 1 410 631 - -
Lac13g0261 639 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 45 622 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0261 Lac-Chr13:1873573 Lac8g3008 Lac-Chr8:46919788 2.60E-78 dispersed
Lac13g0261 Lac-Chr13:1873573 Lac3g0460 Lac-Chr3:3514863 4.90E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85843 PF00069 Pkinase 1.70E-43 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0261 - - - 0.0