Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0276 ATGAATTCTGAAACGACCCATTTTCTTTCAAAAGCTGAATCTCTCCCCTCTCTTTGGATCCCAGATTCTTGCTCTTCCATGGAAGAGCAATTTCTGCAACTCCAAGTGAATGGAGATCGAAACCAAGGTGGAAAGAAAAGAAGGCTCACAGTGGATCAAGTTCGGTTACTTGAGAGGAACTTCAATCTTGAGAACAAGCTCGAGCATGAGAGGAAGGTTCAAATTGCAGAGGAGATTGGTTTGCGGCCTCGCCAAGTTGCAGTCTGGTTTCAGAATCGAAGGGCTCGATCCAAGACCAAGAAGATTGAAAATGATTATGATTCTTTGAATGCTGAATATGATAAGCTCAAGAATGACTTTGACAGTCTTCTCAAGCTGAATCAACAACTGAAAGCAGAGGTTGATGAACTAAGAGAAAAATGCGCTGCTAATGAGAAGATGAAGAATCCTTTTGAGCCAGTTGAGGTTGAAGCCATGGATTCATCAGTTACAGAACTTGGAAAAGCAAATACAAAGGAAAAGGTTGAAAATTTTTACAACGTGCAAATGGGATCATTCAGACAGGAAGAGGGTAGCCGAAGTTCAAGCAAAAGTGATAATGCTTTTTATTCTGAAAGCCCCACCAGGGAAAACCAGTCACAGTCAGACAATTTCTTGCAAGATGAAGAAGATGAATTAGGCTACTTGGGGAAACTGGAAGATGAACTTTCTGCTGATGAATTCATGGATTCCTTTAATATTATCAGTAGTGCAGTTGAAGATCAATCTTTCTGCTTCTGGTCTTATTGA 789 40.56 MNSETTHFLSKAESLPSLWIPDSCSSMEEQFLQLQVNGDRNQGGKKRRLTVDQVRLLERNFNLENKLEHERKVQIAEEIGLRPRQVAVWFQNRRARSKTKKIENDYDSLNAEYDKLKNDFDSLLKLNQQLKAEVDELREKCAANEKMKNPFEPVEVEAMDSSVTELGKANTKEKVENFYNVQMGSFRQEEGSRSSSKSDNAFYSESPTRENQSQSDNFLQDEEDELGYLGKLEDELSADEFMDSFNIISSAVEDQSFCFWSY 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1979028 1980042 - Lag0040072.1 Lac13g0276 591432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0276 262 SMART HOX_1 43 104 IPR001356 GO:0003677(InterPro)
Lac13g0276 262 ProSitePatterns 'Homeobox' domain signature. 75 98 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac13g0276 262 ProSiteProfiles 'Homeobox' domain profile. 40 100 IPR001356 GO:0003677(InterPro)
Lac13g0276 262 Pfam Homeobox associated leucine zipper 100 140 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac13g0276 262 Gene3D - 101 151 - -
Lac13g0276 262 Coils Coil 92 147 - -
Lac13g0276 262 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 38 220 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Lac13g0276 262 MobiDBLite consensus disorder prediction 186 215 - -
Lac13g0276 262 FunFam homeobox-leucine zipper protein ATHB-6-like 48 94 - -
Lac13g0276 262 SUPERFAMILY Homeodomain-like 30 101 IPR009057 -
Lac13g0276 262 CDD homeodomain 45 101 IPR001356 GO:0003677(InterPro)
Lac13g0276 262 Pfam Homeodomain 45 98 IPR001356 GO:0003677(InterPro)
Lac13g0276 262 MobiDBLite consensus disorder prediction 186 217 - -
Lac13g0276 262 Gene3D - 26 100 - -
Lac13g0276 262 PRINTS Lambda-repressor HTH signature 80 96 IPR000047 GO:0003677(InterPro)
Lac13g0276 262 PRINTS Lambda-repressor HTH signature 71 80 IPR000047 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0276 K09338 - - csv:101204430 367.851
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0276 Lac-Chr13:1979028 Lac6g0056 Lac-Chr6:467703 7.50E-24 dispersed
Lac10g0375 Lac-Chr10:2929338 Lac13g0276 Lac-Chr13:1979028 1.20E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g846 . Blo16g01135 . Bda11g01236 Bpe13g00467 . . . . . . . . . Sed04g0677 . . Bhi07g01613 Tan04g1126 Cmetu10g1215 Lac13g0276 Hepe10g1711 . . Cla05g02477 Cam05g2661 Cec05g2695 Cco05g2730 Clacu05g2663 Cmu05g2517 Cre05g2632 . . Cone6ag0614 Cone9ag0617 Lsi04g00464 Csa05g02414 Chy10g00972 Cme10g00452 . . . Bda11g01236 . . Bma01g00080 Bma06g00658 . . . . . Car04g01668 Car15g00313 Cpe13g00941 . . . . . . . . . . . . . . . . . Chy09g00265 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013330 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23133 PF00046 Homeodomain 2.80E-15 CL0123 Lac TF