Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0284 ATGGAGGTAATCGCTGAAGATGGGAAAGTTGGGTCTCGGGAAGTGAGCGAATCGAAGGGGAAGAAGAAGCAGAAGAACAACAAGGAACGAGTTGAAACTGTAGAAGAGGAGACTGGTTGTTGGATTGCTCTGAGGATTTTTGGCAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATCAGTGGGACTAGTATTAACTATGCTGAAAGCAAGTCTACGGCTGATTCAAGTAGAGACCAACCAACACCTCGAGATATATCTTCTACGAACACAAGTATGAGTAATGCAGAGAGTAATTCATCCACTTCCAAACTAGAAGAGGAACTTAAAATTTCTCCTCATCTACGGAAATTTTCATTTAATGATCTTAAGTTGGCTACAAGGAATTTCAGACCCGAGAGTCTTCTTGGTGAGGGTGGTTTTGGTTGTGTTTTTAAGGGTTGGGTTGAAGAAAATGGAACTGCTCCAGTTAAACCTGGCACAGGACTCACTGTTGCTGTTAAAACCCTCAACCATGATGGTCTTCAGGGCCATAAAGAGTGGATGGCTGAAGTGAATTTTCTTAGTGATCTCAAACATCCCAACTTGGTCAGACTTATCGGTTACTGCAATGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCTAGAGGAAGCCTGGAGAATCATCTTTTCCGGAGATCGCTACCTCTCCCGTGGTCTATTAGGATGAAAATTGCACTAGGTGCTGCCAAGGGTCTTGCTTTTCTTCATGAGGAAGCAAAAAGGCCTGTGATATATCGTGATTTTAAAACATCCAACATCCTACTAGATGCCGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCAAAAGATGGACCCGATGGAGATAAAACCCATGTCTCTACTCGTGTGATGGGAACATATGGCTATGCAGCTCCAGAATACGTGATGACCGGACATCTTACATCAAGGAGTGATGTTTACAGTTTCGGAGTGGTTCTTCTCGAAATGCTAACTGGCAGAAGATCCATGGATAAAAACCGTCCTAATGGTGAACATAACCTTGTGGAATGGGCACGGCCATACCTAGGAGAGAAAAAGAGATTCTATCGTTTGATAGACCCTAGGCTTGAAGGTCATTTCTCAATCAAAGGTGCCCAAAAAGCAGTACAACTGGCTGCTCAATGCCTTAGCCGAGATCAAAAGGTCAGACCCTTGATGAGTGAAGTTGTTGAAGCCTTGAAGCCTCTCCCAAACCTCAAGGACATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCTGACCGCATACGATCCAGCCCAATGGCGAGAAATGGCTATCACGCAGGTGCAGGACCAGTTCCCAAGAATGGGCAGCAACTACGCAGCCATTCAGTCGCCAATGGTTCTCATGCTTCTCCATATCATCATCAGCAACCTCATCCATCTCCAAAACCCACTGAGAAATCCTAA 1467 44.1 MEVIAEDGKVGSREVSESKGKKKQKNNKERVETVEEETGCWIALRIFGSCISSRSKVDSSISGTSINYAESKSTADSSRDQPTPRDISSTNTSMSNAESNSSTSKLEEELKISPHLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVRLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAKRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKVRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRIRSSPMARNGYHAGAGPVPKNGQQLRSHSVANGSHASPYHHQQPHPSPKPTEKS 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2035816 2039371 + Lag0040080.1 Lac13g0284 591440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0284 488 Gene3D Transferase(Phosphotransferase) domain 1 217 433 - -
Lac13g0284 488 MobiDBLite consensus disorder prediction 440 488 - -
Lac13g0284 488 SMART serkin_6 131 414 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0284 488 SUPERFAMILY Protein kinase-like (PK-like) 107 411 IPR011009 -
Lac13g0284 488 Gene3D Phosphorylase Kinase; domain 1 89 216 - -
Lac13g0284 488 MobiDBLite consensus disorder prediction 69 103 - -
Lac13g0284 488 Pfam Protein tyrosine and serine/threonine kinase 135 411 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0284 488 FunFam Probable serine/threonine-protein kinase PBL8 217 432 - -
Lac13g0284 488 CDD STKc_IRAK 137 414 - -
Lac13g0284 488 MobiDBLite consensus disorder prediction 456 475 - -
Lac13g0284 488 PANTHER OS01G0588500 PROTEIN-RELATED 97 415 IPR050823 -
Lac13g0284 488 FunFam Serine/threonine-protein kinase BIK1 98 216 - -
Lac13g0284 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0284 488 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0284 488 MobiDBLite consensus disorder prediction 1 35 - -
Lac13g0284 488 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524(InterPro)
Lac13g0284 488 MobiDBLite consensus disorder prediction 69 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0284 Lac-Chr13:2035816 Lac3g0772 Lac-Chr3:6186824 4.50E-139 dispersed
Lac1g1776 Lac-Chr1:39260720 Lac13g0284 Lac-Chr13:2035816 1.20E-55 transposed
Lac13g0284 Lac-Chr13:2035816 Lac6g0048 Lac-Chr6:410002 1.30E-114 wgd
Lac13g0284 Lac-Chr13:2035816 Lac8g2666 Lac-Chr8:44158979 2.90E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85844 PF07714 PK_Tyr_Ser-Thr 1.20E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0284 - - - 0.0