Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0288 ATGGTACCATTAACGACCAGAAATATGATTCGGCTGCTGATAACATTGTCATTGGTGGCTGTCGCATTTGCTGACATTGCAAACTTCGATGACTACTGGAAAGCACGCGCCGCCGAGGCCGAACAAGCCGCCGTCCAGGCCTTTGATCCCAATCCTGACAACGTCACCGACTCCCTCAACGCCAAAGTTGACCAGGAATGGGGTGGAAGCAACAGTACGAGGAGGGGTTTGAAGAAATACACAGGGCCATGCAGAGCCACAAACCCCATCGATAGGTGCTGGAGATGCGACCCAAATTGGGCCAACGACCGTAAGAAGCTGGCCAGTTGCGTTCTGGGTTTTGGCCGCAAGACCACCGGCGGCAAGTTGGGTCCATACTACGTGGTGAACGACTCGTCGGACTCGGACCTTATGAACCCAAAACCTGGGACCCTGCGTCATGCTGTGATCCAAAAAGGGCCGCTCTGGATCACCTTTTCTACCAACATGGCCATTAGGCTCAATCAAGAGCTCATCATGACCAGCGACAAGACCATCGATGCTAGAGGGGCCAATGTTCAGATTGCATATGGGGCTGGCATTACTGTTCAGTACGTCAAGAATGTCATCATCCATGGCCTTCGTATTCATCACATCGTCATGGGTACTGGTGGGATGATCAGAGACTCTGTCGACCATGTTGGTTTGAGGACAATGAGCGATGGCGACGGCATTTCCATCTTCGGTTCCTCCAATATTTGGATTGACCATGTTTCCATGTCCAAATGTCACGACGGTCTCATCGATGCCATTATGGGATCCACTGCCATCACCATCTCCAATTGCCACTTTACTCACCACAATGACGTGATGTTGTTCGGAGCGAGTGACGGCTACTCAAATGATCAAATAATGCAAGTGACGGTGGCATTCAACCACTTCGGTCAAGGATTGGTGCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCATGTTGTCAACAATGACTACACTCATTGGCTTATGTATGCCATCGGTGGTAGCCAACATCCCACCATTATCAGCCAGGGCAATCGCTTCATTGCTCCTCCCAATGGATATGCTAAAGAGGTGACGAAGAGAGAATACTCGCCTGAGAATGTGTGGAAGACCTGGACATGGAGATCAGAGGGAGATTTGATGATGAACGGAGCATTCTTTACTACCTCGGGTGATCTAAGAAAGAGAAGACCCTACTCAAGGATGGATATGATCTCATATAAGCCAGGGACATACGTTACGAGAATGACACGTTTCGCAGGCGCGCTCCCCTGCTTCGTCGGCCGACCTTGCTAA 1314 50.76 MVPLTTRNMIRLLITLSLVAVAFADIANFDDYWKARAAEAEQAAVQAFDPNPDNVTDSLNAKVDQEWGGSNSTRRGLKKYTGPCRATNPIDRCWRCDPNWANDRKKLASCVLGFGRKTTGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWITFSTNMAIRLNQELIMTSDKTIDARGANVQIAYGAGITVQYVKNVIIHGLRIHHIVMGTGGMIRDSVDHVGLRTMSDGDGISIFGSSNIWIDHVSMSKCHDGLIDAIMGSTAITISNCHFTHHNDVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNGYAKEVTKREYSPENVWKTWTWRSEGDLMMNGAFFTTSGDLRKRRPYSRMDMISYKPGTYVTRMTRFAGALPCFVGRPC 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2053129 2054781 + Lag0040084.1 Lac13g0288 591444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0288 437 PANTHER PECTATE LYASE 18-RELATED 24 434 IPR045032 GO:0030570(InterPro)
Lac13g0288 437 Gene3D - 87 430 IPR012334 -
Lac13g0288 437 Pfam Pectate lyase 174 353 IPR002022 -
Lac13g0288 437 SMART amb_all 162 359 IPR002022 -
Lac13g0288 437 Pfam Pectate lyase, N terminus 26 77 IPR007524 GO:0030570(InterPro)
Lac13g0288 437 SUPERFAMILY Pectin lyase-like 88 428 IPR011050 -
Lac13g0288 437 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Lac13g0288 437 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Lac13g0288 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Lac13g0288 437 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Lac13g0288 437 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Lac13g0288 437 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Lac13g0288 437 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Lac13g0288 437 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0288 Lac-Chr13:2053129 Lac8g0534 Lac-Chr8:7687450 1.40E-176 dispersed
Lac10g0370 Lac-Chr10:2904891 Lac13g0288 Lac-Chr13:2053129 2.80E-164 wgd
Lac13g0288 Lac-Chr13:2053129 Lac6g0050 Lac-Chr6:432129 1.30E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0288 K01728 - csv:101206497 776.163