Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac13g0301 | ATGACAAGCAATGGGATGGCGTTTTTTCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCACGATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGATTTTCATGGAGTTGCATCATTTCTAGGGAAACGATCCATGTCATTTTCAGGGGCGGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGACTTAACATGGAGCAAGTCAAAACACTTGAGAAAAATTTTGAATTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCACTTGGGCTACAGCCAAGACAGATTGCTATTTGGTTTCAAAACAGAAGGGCTAGGTGGAAGACTAAGCAGCTAGAAAAAGACTACGATCTTCTCAAGAGACAATTCGAAGCTATCAAATCAGATAATGAAGCCCTCAAATCCCAGAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAATAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGATCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAACATCAAATTGGACATCTCAAGAACACCTGCCATTGACAGCCCTCATCAGCATCAGCATCAGCATCAGCATCAGCACCATCCAACCAACAGACCTCTTTTTCCCACTTCCTTAAGGCCTCCAGCTTTGGCTCAGCTCTTCCAAACCTCTTCAAGATCAGACCCACCAAAGCAACTTGAAAACAACAACAACAACAATCATCAAATTGCCAAAGAAGAAAGCAGCAGCTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGTTTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA | 915 | 42.73 | MTSNGMAFFPANFMLQTSHEDHDHHHSSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSQNQKLQAEIMALKNREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHQHQHQHHPTNRPLFPTSLRPPALAQLFQTSSRSDPPKQLENNNNNNHQIAKEESSSLSNMFCGMDDHSGFWPWLEQQHFN | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 2133202 | 2134758 | - | Lag0040097.1 | Lac13g0301 | 591457 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac13g0301 | 304 | SMART | HOX_1 | 82 | 143 | IPR001356 | GO:0003677(InterPro) | |
Lac13g0301 | 304 | Pfam | Homeodomain | 84 | 137 | IPR001356 | GO:0003677(InterPro) | |
Lac13g0301 | 304 | ProSitePatterns | 'Homeobox' domain signature. | 114 | 137 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lac13g0301 | 304 | CDD | homeodomain | 84 | 140 | IPR001356 | GO:0003677(InterPro) | |
Lac13g0301 | 304 | Coils | Coil | 131 | 179 | - | - | |
Lac13g0301 | 304 | PRINTS | Lambda-repressor HTH signature | 119 | 135 | IPR000047 | GO:0003677(InterPro) | |
Lac13g0301 | 304 | PRINTS | Lambda-repressor HTH signature | 110 | 119 | IPR000047 | GO:0003677(InterPro) | |
Lac13g0301 | 304 | ProSiteProfiles | 'Homeobox' domain profile. | 79 | 139 | IPR001356 | GO:0003677(InterPro) | |
Lac13g0301 | 304 | FunFam | Homeobox-leucine zipper protein ATHB-13 | 76 | 143 | - | - | |
Lac13g0301 | 304 | Gene3D | - | 76 | 145 | - | - | |
Lac13g0301 | 304 | MobiDBLite | consensus disorder prediction | 187 | 209 | - | - | |
Lac13g0301 | 304 | MobiDBLite | consensus disorder prediction | 180 | 242 | - | - | |
Lac13g0301 | 304 | MobiDBLite | consensus disorder prediction | 62 | 84 | - | - | |
Lac13g0301 | 304 | Pfam | Homeobox associated leucine zipper | 139 | 180 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac13g0301 | 304 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 62 | 285 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Lac13g0301 | 304 | SUPERFAMILY | Homeodomain-like | 73 | 141 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0301 | Lac-Chr13:2133202 | Lac5g1909 | Lac-Chr5:37430543 | 2.70E-25 | dispersed | |
Lac13g0301 | Lac-Chr13:2133202 | Lac6g0056 | Lac-Chr6:467703 | 8.70E-24 | wgd | |
Lac13g0301 | Lac-Chr13:2133202 | Lac8g2671 | Lac-Chr8:44187497 | 3.10E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23135 | PF00046 | Homeodomain | 3.00E-15 | CL0123 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac13g0301 | K09338 | - | csv:101221595 | 518.85 |