Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0301 ATGACAAGCAATGGGATGGCGTTTTTTCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCACGATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGATTTTCATGGAGTTGCATCATTTCTAGGGAAACGATCCATGTCATTTTCAGGGGCGGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGACTTAACATGGAGCAAGTCAAAACACTTGAGAAAAATTTTGAATTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCACTTGGGCTACAGCCAAGACAGATTGCTATTTGGTTTCAAAACAGAAGGGCTAGGTGGAAGACTAAGCAGCTAGAAAAAGACTACGATCTTCTCAAGAGACAATTCGAAGCTATCAAATCAGATAATGAAGCCCTCAAATCCCAGAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAATAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGATCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAACATCAAATTGGACATCTCAAGAACACCTGCCATTGACAGCCCTCATCAGCATCAGCATCAGCATCAGCATCAGCACCATCCAACCAACAGACCTCTTTTTCCCACTTCCTTAAGGCCTCCAGCTTTGGCTCAGCTCTTCCAAACCTCTTCAAGATCAGACCCACCAAAGCAACTTGAAAACAACAACAACAACAATCATCAAATTGCCAAAGAAGAAAGCAGCAGCTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGTTTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA 915 42.73 MTSNGMAFFPANFMLQTSHEDHDHHHSSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSQNQKLQAEIMALKNREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHQHQHQHHPTNRPLFPTSLRPPALAQLFQTSSRSDPPKQLENNNNNNHQIAKEESSSLSNMFCGMDDHSGFWPWLEQQHFN 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2133202 2134758 - Lag0040097.1 Lac13g0301 591457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0301 304 SMART HOX_1 82 143 IPR001356 GO:0003677(InterPro)
Lac13g0301 304 Pfam Homeodomain 84 137 IPR001356 GO:0003677(InterPro)
Lac13g0301 304 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac13g0301 304 CDD homeodomain 84 140 IPR001356 GO:0003677(InterPro)
Lac13g0301 304 Coils Coil 131 179 - -
Lac13g0301 304 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677(InterPro)
Lac13g0301 304 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677(InterPro)
Lac13g0301 304 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677(InterPro)
Lac13g0301 304 FunFam Homeobox-leucine zipper protein ATHB-13 76 143 - -
Lac13g0301 304 Gene3D - 76 145 - -
Lac13g0301 304 MobiDBLite consensus disorder prediction 187 209 - -
Lac13g0301 304 MobiDBLite consensus disorder prediction 180 242 - -
Lac13g0301 304 MobiDBLite consensus disorder prediction 62 84 - -
Lac13g0301 304 Pfam Homeobox associated leucine zipper 139 180 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac13g0301 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 62 285 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Lac13g0301 304 SUPERFAMILY Homeodomain-like 73 141 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0301 Lac-Chr13:2133202 Lac5g1909 Lac-Chr5:37430543 2.70E-25 dispersed
Lac13g0301 Lac-Chr13:2133202 Lac6g0056 Lac-Chr6:467703 8.70E-24 wgd
Lac13g0301 Lac-Chr13:2133202 Lac8g2671 Lac-Chr8:44187497 3.10E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23135 PF00046 Homeodomain 3.00E-15 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0301 K09338 - csv:101221595 518.85