Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0302 ATGAAGAATGGACAGCCCAGCCCAGCCCAGCCCTGCCTGGCCCACTGTGGTCTAAAGTTCTTCAGTTCGGTAGCGGAACATTCACGACTGGCGTCTTCCTTTCCTTGGGAGCTATTCTCCAGTTTTTCTTCTGAAACTTCGTTTTCTGAAAGTCAATTCGTTTGTCTTCCTCTGCAAGTCTTACATTTCAACGAACCAAGAGACGAATCAAGTCACTGTTGCTGCGGAAACATGAATCCTGATGGTTATACGGTTGAAGTGACGGGCTTGTCTCCTAAAGCAACAGAGAAGGATGTCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTCGTTGAGATTGTTAGATCTGGTGAAGATGCCTGCACTGCCTATGTGTCATTTAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGGTGCAACAATTGTAGATCAACGAGTGTGCATAACACGGTGGGGACATTTTGATGATGAATTTGGTTTTTGGAGTAGGCCTTCCGGTCACCATGAAGAAGACAGTACTCCTGCTTCGACACAAAGAAGCGAGTTTGTTTCCAGCGCTGGTAGTGCAGTGACCATGGCCCAGGAAGTGGTCCAAACCATGCTGGCCATGGGTTACGTCCTGGGCAAAGATACATTAACCAAAGCCAAAGCATTTGATGAATCTCATCAGGTCTCAGCAACCGCAGCAGCTAAGGTAGTTGACTTGAGTAATAGAATTGGCCTTACTGACATGATTGGTGCGGGTTTTGAAGCAGTTAAAACCATGGATGAGAAGTACCACGTATTGCAGACAACCAAATCAGCTATATCAGCCACTGGAAGAACAGCTGCTGCTGCTGCCGATACTGTGGTTAGGAGTAGCTACTTCTCCAGGGGTGCTCTTTTCATTTCTGATGCCCTGGATCGAGCAGCCAAAGTTGCAGCTGACTTGGGTAGTCGTGGTCTTGAACATTAA 966 47.2 MKNGQPSPAQPCLAHCGLKFFSSVAEHSRLASSFPWELFSSFSSETSFSESQFVCLPLQVLHFNEPRDESSHCCCGNMNPDGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETACLLSGATIVDQRVCITRWGHFDDEFGFWSRPSGHHEEDSTPASTQRSEFVSSAGSAVTMAQEVVQTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVVDLSNRIGLTDMIGAGFEAVKTMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFISDALDRAAKVAADLGSRGLEH 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2141705 2144548 - Lag0040098.1 Lac13g0302 591458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0302 321 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 83 317 - -
Lac13g0302 321 SUPERFAMILY RNA-binding domain, RBD 80 155 IPR035979 GO:0003676(InterPro)
Lac13g0302 321 CDD RRM_Vip1_like 85 153 IPR034360 -
Lac13g0302 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 149 IPR000504 GO:0003723(InterPro)
Lac13g0302 321 SMART rrm1_1 84 154 IPR000504 GO:0003723(InterPro)
Lac13g0302 321 Gene3D - 69 161 IPR012677 -
Lac13g0302 321 Pfam RNA recognition motif 87 147 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0302 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1303 Lac-Chr13:12004889 Lac13g0302 Lac-Chr13:2141705 4.20E-33 transposed
Lac1g1668 Lac-Chr1:38030739 Lac13g0302 Lac-Chr13:2141705 4.20E-30 transposed
Lac5g0199 Lac-Chr5:1722463 Lac13g0302 Lac-Chr13:2141705 8.60E-30 transposed
Lac9g1478 Lac-Chr9:33134445 Lac13g0302 Lac-Chr13:2141705 1.30E-33 transposed
Lac13g0302 Lac-Chr13:2141705 Lac8g2673 Lac-Chr8:44214477 1.00E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g881 . . . . . . . . Cmo04g01723 Cmo18g01187 . Cma18g01164 . Car18g01073 Sed06g1544 Cpe09g00165 . Bhi07g01588 Tan04g1099 Cmetu10g1298 Lac13g0302 Hepe10g1726 . . . . . . . . . Cone13ag0968 Cone19ag0958 . . Lsi04g00441 Csa05g02433 Chy10g00986 Cme10g00432 . Blo11g00763 Bda07g01461 . Bpe11g01634 . . . . Cmo04g02886 . Cma04g01644 . Car04g01685 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001744 2 4 2 0 1 2 2 2 2 2 2 2 2 2 2 3 1 4 2 2 2 2 2 2 2 2 2 5 6 2 68