Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac13g0309 | ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAAAAAGAAGAGCAACACCACCACCGCCAACAACAGCCTTGTTCCACCTCCGCAAACAACGGAACAACAACAACTACAACAACAACTCCCACATCCACAACTGCAAATCCAAATCCAAATCTTCAATCTTCTTCTCCCAAGAAGCCGACACCCAAAAGGGCCACCACCAAAGACCGCCACACAAAAGTCGATGGCCGTGGCCGCCGGATTCGGATGCCGGCCCTTTGTGCCGCCAGGGTTTTCCAGCTCACTAGAGAGCTTGGCCACAAGTCTGACGGCGAAACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCTGTTATTGCAGCCACCGGCACCGGTACAATTCCGGCTAATTTCACCTCGCTTAATATCTCTCTCCGTAGCTCCGGCTCCACCATCTCCGCCCCTTCCCACTTGCGGACAAGCTATTTCAGCCCCACCCAATTCGCTGTTAGAACAAGATCCGATCTTTGGGACAGAAATAATAATCTCGTCGATGATTCCTCTACATTCTTGAATTTCAACTCTCCTAATTACGTCAACGCGTTCAAGCACGATCAGGGAGGGATTGATGTCACCGACGCCGGGAAAAAACGGCGGCCGGAGCAGTCGGAATCGTCGTCGGAGAATCCGGTAGGGAATTATTTGGTTCAATCGAGTACTGGGTCGATTCCGGCGAGTCACAGCACGCCGGCGCCGGCGACATTTTGGATGGTTACGAATCCGAGTAATCCAGCGAGTGATCCGATGTGGACATTTCCGTCGGTGAGCAACAGCAGCATGTTCAGAGGGGCGCCCGTGGCCGCCGCTGGCGGCGGCGGGTTTCATTTCATGAATCTCCCACCACCAATGGCTCTTTTGCCAAGTGCCCAACAGTTGAGCTCCGGGATCGGAAGCGGCGGCGGTCCGGCGACCGACACTCACTTGGGGATGTTGGCGGCTTTGAGTGCTTATAGAACGATGCCGGGATTGTCAGTTTCTGAATCTCCAACAAGAGGAGTGGCGGCTGTTCATCAAGGTGGAAATGAGGCTCATGATTCCACTTCTAATCGTGATCAATCATAG | 1128 | 53.19 | MIMDGENGIRRPNFPLQLLEKKEEQHHHRQQQPCSTSANNGTTTTTTTTPTSTTANPNPNLQSSSPKKPTPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNNLVDDSSTFLNFNSPNYVNAFKHDQGGIDVTDAGKKRRPEQSESSSENPVGNYLVQSSTGSIPASHSTPAPATFWMVTNPSNPASDPMWTFPSVSNSSMFRGAPVAAAGGGGFHFMNLPPPMALLPSAQQLSSGIGSGGGPATDTHLGMLAALSAYRTMPGLSVSESPTRGVAAVHQGGNEAHDSTSNRDQS | 375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 2216427 | 2217554 | - | Lag0040105.1 | Lac13g0309 | 591465 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac13g0309 | 375 | ProSiteProfiles | TCP domain profile. | 76 | 130 | IPR017887 | - | |
Lac13g0309 | 375 | MobiDBLite | consensus disorder prediction | 227 | 249 | - | - | |
Lac13g0309 | 375 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 45 | 338 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Lac13g0309 | 375 | MobiDBLite | consensus disorder prediction | 211 | 226 | - | - | |
Lac13g0309 | 375 | MobiDBLite | consensus disorder prediction | 31 | 70 | - | - | |
Lac13g0309 | 375 | Pfam | TCP family transcription factor | 75 | 178 | IPR017887 | - | |
Lac13g0309 | 375 | MobiDBLite | consensus disorder prediction | 347 | 375 | - | - | |
Lac13g0309 | 375 | MobiDBLite | consensus disorder prediction | 206 | 249 | - | - | |
Lac13g0309 | 375 | MobiDBLite | consensus disorder prediction | 19 | 89 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0309 | Lac-Chr13:2216427 | Lac8g0084 | Lac-Chr8:1165814 | 3.80E-29 | dispersed | |
Lac13g0026 | Lac-Chr13:222938 | Lac13g0309 | Lac-Chr13:2216427 | 4.10E-37 | transposed | |
Lac10g0060 | Lac-Chr10:531156 | Lac13g0309 | Lac-Chr13:2216427 | 9.10E-47 | wgd | |
Lac13g0309 | Lac-Chr13:2216427 | Lac3g0623 | Lac-Chr3:4835985 | 6.60E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23137 | PF03634 | TCP | 1.20E-37 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac13g0309 | - | - | - | 0.0 |