Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0309 ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAAAAAGAAGAGCAACACCACCACCGCCAACAACAGCCTTGTTCCACCTCCGCAAACAACGGAACAACAACAACTACAACAACAACTCCCACATCCACAACTGCAAATCCAAATCCAAATCTTCAATCTTCTTCTCCCAAGAAGCCGACACCCAAAAGGGCCACCACCAAAGACCGCCACACAAAAGTCGATGGCCGTGGCCGCCGGATTCGGATGCCGGCCCTTTGTGCCGCCAGGGTTTTCCAGCTCACTAGAGAGCTTGGCCACAAGTCTGACGGCGAAACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCTGTTATTGCAGCCACCGGCACCGGTACAATTCCGGCTAATTTCACCTCGCTTAATATCTCTCTCCGTAGCTCCGGCTCCACCATCTCCGCCCCTTCCCACTTGCGGACAAGCTATTTCAGCCCCACCCAATTCGCTGTTAGAACAAGATCCGATCTTTGGGACAGAAATAATAATCTCGTCGATGATTCCTCTACATTCTTGAATTTCAACTCTCCTAATTACGTCAACGCGTTCAAGCACGATCAGGGAGGGATTGATGTCACCGACGCCGGGAAAAAACGGCGGCCGGAGCAGTCGGAATCGTCGTCGGAGAATCCGGTAGGGAATTATTTGGTTCAATCGAGTACTGGGTCGATTCCGGCGAGTCACAGCACGCCGGCGCCGGCGACATTTTGGATGGTTACGAATCCGAGTAATCCAGCGAGTGATCCGATGTGGACATTTCCGTCGGTGAGCAACAGCAGCATGTTCAGAGGGGCGCCCGTGGCCGCCGCTGGCGGCGGCGGGTTTCATTTCATGAATCTCCCACCACCAATGGCTCTTTTGCCAAGTGCCCAACAGTTGAGCTCCGGGATCGGAAGCGGCGGCGGTCCGGCGACCGACACTCACTTGGGGATGTTGGCGGCTTTGAGTGCTTATAGAACGATGCCGGGATTGTCAGTTTCTGAATCTCCAACAAGAGGAGTGGCGGCTGTTCATCAAGGTGGAAATGAGGCTCATGATTCCACTTCTAATCGTGATCAATCATAG 1128 53.19 MIMDGENGIRRPNFPLQLLEKKEEQHHHRQQQPCSTSANNGTTTTTTTTPTSTTANPNPNLQSSSPKKPTPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNNLVDDSSTFLNFNSPNYVNAFKHDQGGIDVTDAGKKRRPEQSESSSENPVGNYLVQSSTGSIPASHSTPAPATFWMVTNPSNPASDPMWTFPSVSNSSMFRGAPVAAAGGGGFHFMNLPPPMALLPSAQQLSSGIGSGGGPATDTHLGMLAALSAYRTMPGLSVSESPTRGVAAVHQGGNEAHDSTSNRDQS 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2216427 2217554 - Lag0040105.1 Lac13g0309 591465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0309 375 ProSiteProfiles TCP domain profile. 76 130 IPR017887 -
Lac13g0309 375 MobiDBLite consensus disorder prediction 227 249 - -
Lac13g0309 375 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 45 338 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lac13g0309 375 MobiDBLite consensus disorder prediction 211 226 - -
Lac13g0309 375 MobiDBLite consensus disorder prediction 31 70 - -
Lac13g0309 375 Pfam TCP family transcription factor 75 178 IPR017887 -
Lac13g0309 375 MobiDBLite consensus disorder prediction 347 375 - -
Lac13g0309 375 MobiDBLite consensus disorder prediction 206 249 - -
Lac13g0309 375 MobiDBLite consensus disorder prediction 19 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0309 Lac-Chr13:2216427 Lac8g0084 Lac-Chr8:1165814 3.80E-29 dispersed
Lac13g0026 Lac-Chr13:222938 Lac13g0309 Lac-Chr13:2216427 4.10E-37 transposed
Lac10g0060 Lac-Chr10:531156 Lac13g0309 Lac-Chr13:2216427 9.10E-47 wgd
Lac13g0309 Lac-Chr13:2216427 Lac3g0623 Lac-Chr3:4835985 6.60E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23137 PF03634 TCP 1.20E-37 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0309 - - - 0.0