Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0309 ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAAAAAGAAGAGCAACACCACCACCGCCAACAACAGCCTTGTTCCACCTCCGCAAACAACGGAACAACAACAACTACAACAACAACTCCCACATCCACAACTGCAAATCCAAATCCAAATCTTCAATCTTCTTCTCCCAAGAAGCCGACACCCAAAAGGGCCACCACCAAAGACCGCCACACAAAAGTCGATGGCCGTGGCCGCCGGATTCGGATGCCGGCCCTTTGTGCCGCCAGGGTTTTCCAGCTCACTAGAGAGCTTGGCCACAAGTCTGACGGCGAAACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCTGTTATTGCAGCCACCGGCACCGGTACAATTCCGGCTAATTTCACCTCGCTTAATATCTCTCTCCGTAGCTCCGGCTCCACCATCTCCGCCCCTTCCCACTTGCGGACAAGCTATTTCAGCCCCACCCAATTCGCTGTTAGAACAAGATCCGATCTTTGGGACAGAAATAATAATCTCGTCGATGATTCCTCTACATTCTTGAATTTCAACTCTCCTAATTACGTCAACGCGTTCAAGCACGATCAGGGAGGGATTGATGTCACCGACGCCGGGAAAAAACGGCGGCCGGAGCAGTCGGAATCGTCGTCGGAGAATCCGGTAGGGAATTATTTGGTTCAATCGAGTACTGGGTCGATTCCGGCGAGTCACAGCACGCCGGCGCCGGCGACATTTTGGATGGTTACGAATCCGAGTAATCCAGCGAGTGATCCGATGTGGACATTTCCGTCGGTGAGCAACAGCAGCATGTTCAGAGGGGCGCCCGTGGCCGCCGCTGGCGGCGGCGGGTTTCATTTCATGAATCTCCCACCACCAATGGCTCTTTTGCCAAGTGCCCAACAGTTGAGCTCCGGGATCGGAAGCGGCGGCGGTCCGGCGACCGACACTCACTTGGGGATGTTGGCGGCTTTGAGTGCTTATAGAACGATGCCGGGATTGTCAGTTTCTGAATCTCCAACAAGAGGAGTGGCGGCTGTTCATCAAGGTGGAAATGAGGCTCATGATTCCACTTCTAATCGTGATCAATCATAG 1128 53.19 MIMDGENGIRRPNFPLQLLEKKEEQHHHRQQQPCSTSANNGTTTTTTTTPTSTTANPNPNLQSSSPKKPTPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNNLVDDSSTFLNFNSPNYVNAFKHDQGGIDVTDAGKKRRPEQSESSSENPVGNYLVQSSTGSIPASHSTPAPATFWMVTNPSNPASDPMWTFPSVSNSSMFRGAPVAAAGGGGFHFMNLPPPMALLPSAQQLSSGIGSGGGPATDTHLGMLAALSAYRTMPGLSVSESPTRGVAAVHQGGNEAHDSTSNRDQS 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2216427 2217554 - Lag0040105.1 Lac13g0309 591465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0309 375 ProSiteProfiles TCP domain profile. 76 130 IPR017887 -
Lac13g0309 375 MobiDBLite consensus disorder prediction 227 249 - -
Lac13g0309 375 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 45 338 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lac13g0309 375 MobiDBLite consensus disorder prediction 211 226 - -
Lac13g0309 375 MobiDBLite consensus disorder prediction 31 70 - -
Lac13g0309 375 Pfam TCP family transcription factor 75 178 IPR017887 -
Lac13g0309 375 MobiDBLite consensus disorder prediction 347 375 - -
Lac13g0309 375 MobiDBLite consensus disorder prediction 206 249 - -
Lac13g0309 375 MobiDBLite consensus disorder prediction 19 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0309 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0309 Lac-Chr13:2216427 Lac8g0084 Lac-Chr8:1165814 3.80E-29 dispersed
Lac13g0026 Lac-Chr13:222938 Lac13g0309 Lac-Chr13:2216427 4.10E-37 transposed
Lac10g0060 Lac-Chr10:531156 Lac13g0309 Lac-Chr13:2216427 9.10E-47 wgd
Lac13g0309 Lac-Chr13:2216427 Lac3g0623 Lac-Chr3:4835985 6.60E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2023 . 40 264 TCP Transcription Factor Family AT5G23280 62.5 3.8e-65 245.7
Lac13g0918 . 36 260 TCP Transcription Factor Family AT5G23280 58.5 6.9e-59 224.9
Lac10g2715 . 40 210 TCP Transcription Factor Family AT5G23280 65.5 3.1e-51 199.5
Lac8g2693 . 40 210 TCP Transcription Factor Family AT5G23280 66.1 9.0e-51 198.0
Lac12g1849 . 53 342 TCP Transcription Factor Family AT2G45680 54.1 3.2e-70 263.1
Lac13g0309 . 67 167 TCP Transcription Factor Family AT3G47620 88.3 2.3e-42 171.0
Lac13g0026 . 155 237 TCP Transcription Factor Family AT3G47620 90.4 1.9e-36 151.4
Lac10g0060 . 59 160 TCP Transcription Factor Family AT3G47620 72.5 4.2e-36 150.2
Lac8g0084 . 1 313 TCP Transcription Factor Family AT3G27010 56.9 5.4e-61 232.3
Lac4g2142 . 26 251 TCP Transcription Factor Family AT3G27010 53.7 9.9e-55 211.5
Lac8g2023 . 1 263 TCP Transcription Factor Family AT5G08330 58.4 3.8e-67 252.3
Lac13g0918 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 3.5e-60 229.2
Lac10g2715 . 1 214 TCP Transcription Factor Family AT5G08330 56.4 1.2e-52 204.1
Lac8g2693 . 1 214 TCP Transcription Factor Family AT5G08330 58.9 4.6e-52 202.2
Lac4g0252 . 33 149 TCP Transcription Factor Family AT3G02150 66.1 2.8e-37 153.7
Lac12g0797 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 5.1e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23137 PF03634 TCP 1.20E-37 No_clan Lac TF