Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0321 ATGAAACGACCCAACAACTACACAATTTTCATATTCAAGGTTCTCCTTTTGCAGTATCTATCAGCTGTTTGTTTCTCTCAAGATTTCGATTTCTTCTACTTTGTTCAACAGTGGCCAGGAGCATATTGCGATACGAAGCAACAACGTTGCTGCTATCCTAAAACAGGACGGCCATCTGCCGATTTCGGCATCCATGGTCTTTGGCCTAATTACAAAGACGGAAGCTACCCGTCCAACTGCGATCCCGACAGTGTTTTCGACCGAACTCAGATCTCAGATCTATTAAGCAGCATGCAGAAGCACTGGCCATCATTGAGCTGTCCAAGCAGCAATGGATTAAGATTTTGGTCACATGAATGGGAGAAACATGGAACGTGCTCCGAGTCCGAACTCGACCAGAAAGAATATTTTGAAGCAGCGATCAAACTGAAGGAGAAGGCCAATCTCCTCAAAGTCCTTAATAATGCAGGAATTGAAGCAAATGATGAGTTCTACAGCTTAGAGAGTGTGAGAAATGCCATTGAAGAAGGGGTTGGATTTGTTGCTGGGATTGAATGTAACAGAGATTCAGCTGGAAACAGTCAACTTTACCAGATTTATTTGTGTGTTGATACTTCTGGCTCTGAGTTTATCAAATGCCCACTTCTTCCCAAGGGCAAATGTGCTTCAAATATTCAATTCCCTAAGTTTTAA 693 42.57 MKRPNNYTIFIFKVLLLQYLSAVCFSQDFDFFYFVQQWPGAYCDTKQQRCCYPKTGRPSADFGIHGLWPNYKDGSYPSNCDPDSVFDRTQISDLLSSMQKHWPSLSCPSSNGLRFWSHEWEKHGTCSESELDQKEYFEAAIKLKEKANLLKVLNNAGIEANDEFYSLESVRNAIEEGVGFVAGIECNRDSAGNSQLYQIYLCVDTSGSEFIKCPLLPKGKCASNIQFPKF 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2310704 2311668 + Lag0040117.1 Lac13g0321 591477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0321 230 CDD RNase_T2_euk 29 227 IPR033697 -
Lac13g0321 230 ProSitePatterns Ribonuclease T2 family histidine active site 1. 62 69 IPR018188 GO:0003723(InterPro)|GO:0033897(InterPro)
Lac13g0321 230 Pfam Ribonuclease T2 family 29 213 IPR001568 GO:0003723(InterPro)|GO:0033897(InterPro)
Lac13g0321 230 Gene3D - 22 230 IPR036430 GO:0003723(InterPro)|GO:0033897(InterPro)
Lac13g0321 230 PANTHER RIBONUCLEASE T2 19 222 IPR001568 GO:0003723(InterPro)|GO:0004521(PANTHER)|GO:0005576(PANTHER)|GO:0006401(PANTHER)|GO:0033897(InterPro)
Lac13g0321 230 SUPERFAMILY Ribonuclease Rh-like 23 229 IPR036430 GO:0003723(InterPro)|GO:0033897(InterPro)
Lac13g0321 230 ProSitePatterns Ribonuclease T2 family histidine active site 2. 115 126 IPR033130 -
Lac13g0321 230 FunFam Ribonuclease 3 23 230 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0321 K01166 - - csv:101218904 439.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0321 Lac-Chr13:2310704 Lac4g1540 Lac-Chr4:34069473 1.90E-18 dispersed
Lac13g0320 Lac-Chr13:2304639 Lac13g0321 Lac-Chr13:2310704 2.60E-81 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g920 . . . . . Bpe10g00875 . Bma15g00155 Cmo04g01738 . . . . . Sed06g0633 . Cpe01g01467 Bhi07g01564 Tan04g1076 Cmetu04g1025 Lac13g0321 Hepe10g1745 . . . . . . . . . . . . . Lsi04g00423 Csa05g02454 . Cme10g00413 . . . . . . . . . . . Cma04g01660 . Car04g01699 . Cpe13g00953 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002941 1 2 0 1 2 1 2 1 1 1 1 2 3 1 2 3 2 3 3 2 1 2 1 2 2 2 2 3 2 3 54