Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0329 ATGGGAAGAGTAAAGCTCAAGATTAAGAGATTGGAGAACACAAACGGACGCCAAGCAACATATGCCAAAAGAAAGAACGGTATCATGAAGAAGGCTAATGAGTTATCCATCTTGTGTGACATCGATATTATTCTTCTCATGTTTTCACCAACCGGAAAGCCCTCCCTTTGTTGCGGAAAACGGAGCATTGAAGAGGTAATTGCAAAGTTTGCTCAACAAACTCCTCAGGAAAGGGCAAAAAGGAAATTGGAAAGCCTTGAAGCACTGCGAAAAACTTTTAAGAAACTCGACCACGATGTCAACATACAAGATTTCCTTGGAACAAGAAGCCAAATGATTGAGGATTTGGCTGGCCAAGCAAAGTTATTACGGACCCAACTTTCTGATGTTCATCAGAGATTAAGCTTTTGGGGTAATCCTGATAAGATAAACAACGTGGATCATTTGACCCAAATGGAGAATTCGTTGAGAGAATCACTTGATCAAGTTCGAGCCCACAAGGAAAATCTGCAGAAGAAGCCTCCAGTACCATTAGAGTTCACTAATCAGATGCAGGATGGAATCCATCTACCTTTCGATATGAGTGTTGAGCAACAGCTTCAACAACTCCAACACTTCTCTTGGATTCCCAGTGATGGTCAAAATATAGTTTTACACGACGATCCAAACTTCGTTCCCCATAGGGATGTGGAGTGCTCTGCAAGTTCCTCCTTTGCTAGTTACCCTGGTTATTTCGGCACGGGGAGAAGTCCGGAGATTTCTAATTCTGGACAAGAAAATGGCATCCTCCCTGAACTAAGCAGAACAGAACCTCTAAGACCCCAGCTAGGAGGGCAAAATTCCTACATGTCTTATAATGTCAACTTTTTTAATGACCCGAGATTTCAACCAGCAGCAGAGATGAACCTGCCAGTAAATCCTGTAGATTATCATGTTAATGGGAACTACGACAACACCCAACACAATTGGGCTTCTTCTTCTGGCCCTTGTGCTGTTTCATTGTTAGACGATCGCTTATTTCCATAA 1026 42.4 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKANELSILCDIDIILLMFSPTGKPSLCCGKRSIEEVIAKFAQQTPQERAKRKLESLEALRKTFKKLDHDVNIQDFLGTRSQMIEDLAGQAKLLRTQLSDVHQRLSFWGNPDKINNVDHLTQMENSLRESLDQVRAHKENLQKKPPVPLEFTNQMQDGIHLPFDMSVEQQLQQLQHFSWIPSDGQNIVLHDDPNFVPHRDVECSASSSFASYPGYFGTGRSPEISNSGQENGILPELSRTEPLRPQLGGQNSYMSYNVNFFNDPRFQPAAEMNLPVNPVDYHVNGNYDNTQHNWASSSGPCAVSLLDDRLFP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2358369 2361089 + Lag0040125.1 Lac13g0329 591485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0329 341 Coils Coil 76 96 - -
Lac13g0329 341 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Lac13g0329 341 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 217 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac13g0329 341 Coils Coil 149 173 - -
Lac13g0329 341 Gene3D - 14 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac13g0329 341 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac13g0329 341 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac13g0329 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac13g0329 341 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac13g0329 341 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac13g0329 341 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac13g0329 341 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac13g0329 341 FunFam Agamous-like MADS-box protein AGL30 14 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0329 Lac-Chr13:2358369 Lac5g2657 Lac-Chr5:45040827 1.20E-13 dispersed
Lac5g2008 Lac-Chr5:38525209 Lac13g0329 Lac-Chr13:2358369 2.40E-24 transposed
Lac10g0086 Lac-Chr10:673299 Lac13g0329 Lac-Chr13:2358369 4.10E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23143 PF00319 SRF-TF 7.80E-19 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0329 - - - 0.0