Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0330 ATGGCTTCTGTCCTTGTCTTTTTGGCAGGCTTCTATGCCTTGGTTTCCTCTGTTGATGCTTATGCAGGTGGAGGGTGGACTGGCGCTCATGCCACCTTCTATGGTGGGAGTGATGCTTCAGGGACAATGGGTGGGGCTTGTGGGTATGGTAACTTGTACAGTCAAGGCTATGGAACAAACACTGCTGCTCTGAGTACGGCTTTGTTCAACAACGGGTTGAGCTGTGGCTCTTGCTATGAGATTAAGTGCGCTAGTGACCCTAAATGGTGCCTGCCAGGCTCCATTGTGGTCACTGCCACCAATTTCTGCCCTCCAAACAATGCCCTCCCCAACAACGCTGGAGGTTGGTGCAACCCTCCATTGCAGCACTTTGATCTCTCTCAGCCTGTCTTCCAACACATTGCTCAGTACAGAGCAGGAATTGTGCCTGTTGCCTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATAAGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTTCATGCAGCTTCCATTAAAGGATCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAACTGGCAGAGCAACAGCTACCTCAATGGCCAAAGCCTTTCCTTCAAGGTCACCACCAGTGACGGCCGTACAGTCATCTCCAACAACGTTGTCCCTGCCGGCTGGTCCTTTGGACAGACTTACAGTGGTGCTCAATTCTGA 747 52.07 MASVLVFLAGFYALVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAASIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNVVPAGWSFGQTYSGAQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2362861 2363821 - Lag0040126.1 Lac13g0330 591486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0330 248 Gene3D - 156 248 IPR036749 -
Lac13g0330 248 Gene3D - 13 152 IPR036908 -
Lac13g0330 248 CDD DPBB_EXPA_N 25 151 - -
Lac13g0330 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Lac13g0330 248 FunFam Expansin 15 152 - -
Lac13g0330 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664(InterPro)
Lac13g0330 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664(InterPro)
Lac13g0330 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Lac13g0330 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664(InterPro)
Lac13g0330 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664(InterPro)
Lac13g0330 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664(InterPro)
Lac13g0330 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664(InterPro)
Lac13g0330 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664(InterPro)
Lac13g0330 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664(InterPro)
Lac13g0330 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Lac13g0330 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Lac13g0330 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Lac13g0330 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Lac13g0330 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576(InterPro)
Lac13g0330 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Lac13g0330 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Lac13g0330 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576(InterPro)
Lac13g0330 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Lac13g0330 248 PANTHER EXPANSIN-A15 11 248 IPR002963 GO:0009664(InterPro)
Lac13g0330 248 SMART dpbb_1 61 146 IPR007112 -
Lac13g0330 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Lac13g0330 248 FunFam Expansin 156 248 - -
Lac13g0330 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0330 Lac-Chr13:2362861 Lac8g2843 Lac-Chr8:45632129 2.60E-111 dispersed
Lac6g0524 Lac-Chr6:4362739 Lac13g0330 Lac-Chr13:2362861 2.20E-97 transposed
Lac6g1639 Lac-Chr6:23683462 Lac13g0330 Lac-Chr13:2362861 3.30E-122 transposed
Lac10g0088 Lac-Chr10:679323 Lac13g0330 Lac-Chr13:2362861 5.90E-100 wgd
Lac13g0330 Lac-Chr13:2362861 Lac3g0609 Lac-Chr3:4734490 2.90E-118 wgd
Lac13g0330 Lac-Chr13:2362861 Lac8g2698 Lac-Chr8:44428667 1.50E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0330 - - - 0.0