Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0332 ATGTCTGAAAGTACAGTGAGATTTCAGATTTTTCTTCCTCCCCTTTTTGACAGAAGTGCAATCACACACAGCCTGGATATCAATGGCTGGGCCAAATCAGGCACCAGAAATGATAAACAGCAAAATTCAAGCAACATGATCCTTTACGCCTCTCCACCAAGTTCAATCATCTTCTCCAAAGGCAATGCTCCTCAAGAAGCCACACCAAGAAGACCATCGCCCTCCAACTGTGCGCACCAGAGCAGTCCTGAAGCGCCGAAGACAGTGCCACCATTCCCACGTTTGTTTTGCCACAACCATTCTTGCCTTTGCGGAAGGAGGCGTTTCATTGAAGCAGCCGCCACATCACTGCTCCCTCTATGTCCTTCAATGGCTTCTTCTAATTCATCCTCTGATTACACTGCTGTACTGAACAGGGTTCATCCTCCTAAGCCAGACTGGTACGAGGATTTCTATGCGTCTGTTCTGGCTAATGGCATGAAATTGTATGAAGTGGAGATTGCAGATTACAAGTCCCAGATGTTTTCCAATTTGAGAGGGAAGGCCCAGAAAGTCTTGGAGATTGGAATTGGCACAGGGCCTAATCTTAAATATTACGCTGGGTATGAAGGTATGAAGGTTTATGGTGTGGATCCAAATCGAAAGATGGAGAAATATGCTCGGGAAGCAGCAAAGAATGCTGGCCTTCCAGCTGAGAATTTTGAGTTTAAACAAGCGGTCGGGGAGGCTATACCATTACCCGATGCTTCTGTCGATGCTGTTGTTGGAACACTTGTCTTGTGTTCTGTGATGAATGTTGACATGACTCTTAAGGAGGTGAAGAGAGTTCTGAGACCCGATGGACTATACATATTTGTCGAACATGTGGCTGCAAAAGATGGAACCGTGCTTCGATTTATTCAGGATGTGCTCGATCCTCTGCAGCAGATAGTTGCTGATGGATGTCACCTTACCCGGAGGACAGGGCAGAGTATAACAGAAGCAGGGTTTTCAAATGTTGATCTAAACATGGCTTCCTTCTCTAATGCTGCCTTCATAAATCCTCAAGTTTATGGAGTTGCTTATAGATGA 1071 45.56 MSESTVRFQIFLPPLFDRSAITHSLDINGWAKSGTRNDKQQNSSNMILYASPPSSIIFSKGNAPQEATPRRPSPSNCAHQSSPEAPKTVPPFPRLFCHNHSCLCGRRRFIEAAATSLLPLCPSMASSNSSSDYTAVLNRVHPPKPDWYEDFYASVLANGMKLYEVEIADYKSQMFSNLRGKAQKVLEIGIGTGPNLKYYAGYEGMKVYGVDPNRKMEKYAREAAKNAGLPAENFEFKQAVGEAIPLPDASVDAVVGTLVLCSVMNVDMTLKEVKRVLRPDGLYIFVEHVAAKDGTVLRFIQDVLDPLQQIVADGCHLTRRTGQSITEAGFSNVDLNMASFSNAAFINPQVYGVAYR 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2387955 2390736 - Lag0040128.1 Lac13g0332 591488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0332 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 148 337 IPR029063 -
Lac13g0332 356 PANTHER METHYLTRANSFERASE LIKE 7B 95 355 IPR052356 -
Lac13g0332 356 Gene3D Vaccinia Virus protein VP39 153 348 IPR029063 -
Lac13g0332 356 Pfam Methyltransferase domain 186 285 IPR013216 GO:0008757(InterPro)
Lac13g0332 356 CDD AdoMet_MTases 184 286 - -
Lac13g0332 356 MobiDBLite consensus disorder prediction 59 83 - -
Lac13g0332 356 MobiDBLite consensus disorder prediction 59 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0332 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g928 Blo01g00430 . Bda01g02150 . . . . . . Cmo18g01156 . Cma18g01136 . Car18g01048 Sed07g1943 . . Bhi07g01543 Tan04g1063 Cmetu10g0469 Lac13g0332 Hepe10g1758 . . . . . . . . . . . Cone6ag0575 . Lsi04g00404 Csa05g02470 Chy10g01018 Cme10g00401 . . . . . Bpe02g02337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009174 2 1 1 0 1 1 1 1 1 2 1 1 1 2 2 1 1 1 0 1 2 1 1 1 1 2 0 2 1 1 34