Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0340 ATGAAGTTTGAGAATGAATTCAAGAAACAAATGGTGCCTGAATGGACGGACGCTTATGTGGATTATAATGGCCTCAAAAGATTAGTGCGTGAGATTTCCTGCAAAAAACAGATTAAGAAGTCTAGAGCATCATTTGGGCACTTAAAGAAGAAACCAGCAATTGACAGAAAATGCAGTGAGTTAACCTCTCAACCTAGAAAATTCCATATCATGAAGGATATTGAGAACCAAGTCGAAGATATTGACGAGTCACACCAACATGATCTCAGACAACTTTCCAAATCTAGTTCCCACAGGAAGTTCCAAGAAATATCAGAGATTGAGGTGGCCTTTTTTAGAAAACTTGATGAAGAGCTCAACAAGGTAAATTCCTTCTACAAGGAGAATGTAGAGGCTGTAACCAAAGAAGCAAGTGTTCTAAATAAACAAATGGAGATTTTGATTGCATTGCGAAGGAAGATGGAGATCTCCCCTCTGAATGATAGATACGATTCTCGTGCTGAAGTTTCTACAATCCCCTTGAGCACCACTTTGCACGCGCCTTGTCCTTCAGGAAGCGAGCACATGGATTCAGCAATTGAAGTGGATGCCAATGATAAGCATGGACAAAAAGAGTCTAATTGGGGTCCAGAACTGGATCAAGTTCACAAAGAAGTAAGTAGCAGTGAACATTTAGAAGAAATAACAACAAAGGAAAACAACCAATATTCCCAAGAAATTCTTAAGCATGTGAAAGTCCTCAATGTGATCAACTCTCGTAAATCTACAGCAAAAGATATTTTCAAGAATCCTGGAGACGATGACTTGGATGTTGACAAAGATGACCGAAACAAGATTGAAGAACAGTTGAAAAAAGCGTTTGCTGAATTTTACCAGAAGCTTCATTCGTTAAAGCAATACAGTTTTATGAACCTCTCAGCATTTGCGAGAATCATGAAAAAGTATGAGAAGATTTCATCAAGGACCGTAGCAAGGTCATACATGGAGATCGTGGATAATTCATATCTTGGAACTTCTGATGAGGTCGCTGATCTCATGAAGATGGTGGAAATTACCTTCATCAAAAACTTTTCAAACTCAAATTATACAGAAGGGATGAAGCTTTTGAAGCCAAAAACTAAAAGAGAAAATCACAGTGTGACATTTTCTTCAGGCTTCCTATCTGGTTGCACGGTGGCATTACTTGCAGCAATTGTTTTGAAAATAATATCTCAAAATTTGATGGAGAGGGAAGATGGCACTCATTACATGGAAAATATATTTCCACTTTACAGTCTGTTTGGCTTTATTGTCCTACATATGCTCATGTATGCAGCAGACTTGTACTTCTGGAGACGTGTTCGAGTTAACTATCCATATATTTTTGGTTCCAAGAGAGGAACTGAATTGGGTTGTCAAGAAGTCTTCCTGCTTGGTGCTGGTCTTGCAGTACTTGCATCGGCCAGCTTCTTGGCAAGCTTATACTTGGACAGGGACCTCAGTACTCGAAAGTATAGAACAGAAGCTGAGAAGGTTCCTTTATGCACAACAGCTCTTATTCTTCTCATCACCTTTTGCCCATTCAACATTCTATACAAGTCAAGTCGTTTTTTCTTCATCCGTTGTTTTCTACGCTGTATATCCACTCCTCTGTGCAAGGTTAGGTTTCCAGATTATTTCTTGGCAGATCAGCTCAGTAGTCAGGTACAAGCTTCAAGATGTATCGTTCTGTATATTTGCTACTATGGTTTAGGAGAATACTCAAGGAAGCAAAACAAGTGTCACACACGTGGTGTCTACAACACCCTCTACTTCATTATTGCCATCATACCATTTTGGCTGCGATTCTTACAGTGCATCCGTCGGTTGCTTGAGGAAAAAGATGCAATGCATGGCTACAATGCTCTGAAATACCTCTCAACCATTGTTGCAGTCCTCATTAGAACTGCTTTTGAATTAAAAAAGGGAGTTACCTGGATGGCGTTAGCCTTCATTAGTTCCGCAGTTGCTATGTTGATCAATACATACTGGGACATCGTTGTTGACTGGGGACTTCTGCGTAAGCACTCCAAGAACAAGTACTTGAGAGACCGGCTTTTAGTGTCCAATAAGCACGTCTATTTTGCAGCCATGATATTAAATATACTACTGAGAATTGCTTGGATCCAGTTGGTGTTGGCATTCAACTTGCGTTCATTTCAAAAGGTTGCTGCGACTGCATCAATATCTTGCTTGGAAATCATTCGCCGCGGTCTTTGGAACTTCTTCAGTTTGGAGAACGAGCATCTGAATAACGTTAACAAGTATCGATCATTCAAGTCAGTTCCACTTCCATTCAGCTACTCCGACGATGATAATGACAAAGATGATTGA 2352 39.92 MKFENEFKKQMVPEWTDAYVDYNGLKRLVREISCKKQIKKSRASFGHLKKKPAIDRKCSELTSQPRKFHIMKDIENQVEDIDESHQHDLRQLSKSSSHRKFQEISEIEVAFFRKLDEELNKVNSFYKENVEAVTKEASVLNKQMEILIALRRKMEISPLNDRYDSRAEVSTIPLSTTLHAPCPSGSEHMDSAIEVDANDKHGQKESNWGPELDQVHKEVSSSEHLEEITTKENNQYSQEILKHVKVLNVINSRKSTAKDIFKNPGDDDLDVDKDDRNKIEEQLKKAFAEFYQKLHSLKQYSFMNLSAFARIMKKYEKISSRTVARSYMEIVDNSYLGTSDEVADLMKMVEITFIKNFSNSNYTEGMKLLKPKTKRENHSVTFSSGFLSGCTVALLAAIVLKIISQNLMEREDGTHYMENIFPLYSLFGFIVLHMLMYAADLYFWRRVRVNYPYIFGSKRGTELGCQEVFLLGAGLAVLASASFLASLYLDRDLSTRKYRTEAEKVPLCTTALILLITFCPFNILYKSSRFFFIRCFLRCISTPLCKVRFPDYFLADQLSSQVQASRCIVLYICYYGLGEYSRKQNKCHTRGVYNTLYFIIAIIPFWLRFLQCIRRLLEEKDAMHGYNALKYLSTIVAVLIRTAFELKKGVTWMALAFISSAVAMLINTYWDIVVDWGLLRKHSKNKYLRDRLLVSNKHVYFAAMILNILLRIAWIQLVLAFNLRSFQKVAATASISCLEIIRRGLWNFFSLENEHLNNVNKYRSFKSVPLPFSYSDDDNDKDD 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2419196 2424646 + Lag0040136.1 Lac13g0340 591496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0340 783 Coils Coil 269 289 - -
Lac13g0340 783 Pfam SPX domain 1 329 IPR004331 -
Lac13g0340 783 ProSiteProfiles SPX domain profile. 1 329 IPR004331 -
Lac13g0340 783 Pfam EXS family 420 756 IPR004342 GO:0016020(InterPro)
Lac13g0340 783 ProSiteProfiles EXS domain profile. 588 782 IPR004342 GO:0016020(InterPro)
Lac13g0340 783 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 781 - GO:0000822(PANTHER)|GO:0005737(PANTHER)|GO:0005794(PANTHER)|GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0006817(PANTHER)|GO:0015114(PANTHER)|GO:0016036(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0340 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0340 Lac-Chr13:2419196 Lac13g0343 Lac-Chr13:2443677 1.70E-196 dispersed
Lac13g0340 Lac-Chr13:2419196 Lac13g0342 Lac-Chr13:2428888 9.90E-197 proximal
Lac13g0340 Lac-Chr13:2419196 Lac8g2706 Lac-Chr8:44522715 2.30E-185 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g962 . . . . . . . . . Cmo18g01153 . Cma18g01131 . Car18g01044 Sed07g1954 Cpe09g00196 . Bhi07g01532 Tan04g1053 Cmetu10g1096 Lac13g0340 Hepe10g1766 . . Cla05g02421 Cam05g2603 Cec05g2635 Cco05g2674 Clacu05g2604 Cmu05g2457 Cre05g2573 . . . . Lsi04g00395 . Chy10g01027 Cme10g00391 . . Bda07g01518 . . . . . . Cmo04g02908 . . . . Car15g00257 Cpe13g00962 . . . . . . . . . . . . . . . . . Chy09g00229 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193