Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0345 ATGAGCTCCGAACCGTCTGGAACTGCCGCCGGTTCGCCGGCGCCGGGGAGCGCAGGAGGTAGGGGAAACTCGTCGTCGTCATCGGCATCGGGGACGAGCAGGGAGAAGCAGAAGGAGAAAGCGAGGGTGAGTAGAACGTCGCTGATATTGTGGCACGCTCATCAGAATGATTCTACTGCTGTTCGCAAGCTTCTGGAGGAGGATCAGTCCCTTGTCCATGCCAGAGATTACGACAGCCGCACACCTCTCCATGTTGCATCACTTCATGGCTGGATCGAAGTTGCCAAGTGTTTGATTGAACACGGTGCTGATGTTAATGCCCAAGATCGCTGGAAGAACACTCCGCTTGCTGATGCGGAAGGAGCTAAAAAGCATGGCATGATCGAGTTATTGAAATCGTATGGAGGCCTGTCCTATGGCCAAAATGGAAGTCATTTTGAACCAAAGCCTGTTCCTCCCCCTCTGCCGAATAAATGTGACTGGGAAATTGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATTATTGGCAAGGGGTCCTTCGGTGAAATTTTGAAGGCCTATTGGCGTGGAACCCCTGTAGCTGTCAAACGTATTCTTCCATCACTTTCAGATGATAGACTTGTGATCCAGGACTTCCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCACCCTAACATAGTCCAATTTCTTGGAGCTGTCACTGAGAAGAAACCGCTAATGTTAATCACTGAATACTTAAGAGGGGGTGATCTTCACCAGTACCTCAAGGACAAAGGTTCGCTCAGTCCTGCGACGGCCATCAATTTTGCACTGGACATTGCCAGGGGAATGGCTTATCTCCACAATGAGCCAAATGTTATAATTCATCGTGACCTAAAACCAAGGAACGTTCTTTTAGTCAACTCCGGAGCGGACCATCTAAAAGTTGGTGATTTCGGTCTAAGCAAGCTCATCAAGGTTCAGAATTCACATGATGTTTACAAAATGACTGGCGAGACTGGGAGCTACCGGTATATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAGGTGGACGTGTTTTCTTTTGCAATGATATTATACGAGATGCTTGAGGGAGATCCTCCACTGGCAAATTATGAGCCTTATGAAGCTGCCAAATACGTAGCTGAAGGTCATAGACCAATGTTCCGTTCGAAAGGATACCTTCCTGTTCTAAGAGAGTTAACAGAAGAATGTTGGGCATCTGATATGAACAAGAGACCTTCTTTCTTGGAAATTCTCAAAAGACTTGAAAGGATCAAGGAAAACCTACCAACTGAAAATCACTGGAATTTGTTTAATGCATAA 1341 46.23 MSSEPSGTAAGSPAPGSAGGRGNSSSSSASGTSREKQKEKARVSRTSLILWHAHQNDSTAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWIEVAKCLIEHGADVNAQDRWKNTPLADAEGAKKHGMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPMFRSKGYLPVLRELTEECWASDMNKRPSFLEILKRLERIKENLPTENHWNLFNA 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2467957 2473659 - Lag0040141.1 Lac13g0345 591501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0345 446 Gene3D - 20 144 IPR036770 -
Lac13g0345 446 ProSiteProfiles Protein kinase domain profile. 170 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0345 446 SUPERFAMILY Ankyrin repeat 49 136 IPR036770 -
Lac13g0345 446 CDD STKc_MAP3K-like 176 428 - -
Lac13g0345 446 MobiDBLite consensus disorder prediction 18 32 - -
Lac13g0345 446 FunFam serine/threonine-protein kinase STY46-like 163 249 - -
Lac13g0345 446 SUPERFAMILY Protein kinase-like (PK-like) 168 440 IPR011009 -
Lac13g0345 446 ProSiteProfiles Ankyrin repeat region circular profile. 78 110 - -
Lac13g0345 446 Pfam Protein tyrosine and serine/threonine kinase 174 428 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0345 446 PIRSF ILK 5 446 - -
Lac13g0345 446 MobiDBLite consensus disorder prediction 1 43 - -
Lac13g0345 446 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515(InterPro)
Lac13g0345 446 SMART ANK_2a 78 107 IPR002110 GO:0005515(InterPro)
Lac13g0345 446 Pfam Ankyrin repeats (3 copies) 52 133 IPR002110 GO:0005515(InterPro)
Lac13g0345 446 ProSitePatterns Protein kinases ATP-binding region signature. 176 197 IPR017441 GO:0005524(InterPro)
Lac13g0345 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0345 446 Gene3D Phosphorylase Kinase; domain 1 155 249 - -
Lac13g0345 446 PANTHER SERINE-THREONINE PROTEIN KINASE 22 432 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac13g0345 446 FunFam Integrin-linked protein kinase family 249 444 - -
Lac13g0345 446 Gene3D Transferase(Phosphotransferase) domain 1 250 443 - -
Lac13g0345 446 FunFam serine/threonine-protein kinase STY8 23 144 - -
Lac13g0345 446 SMART serkin_6 170 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0345 Lac-Chr13:2467957 Lac1g3451 Lac-Chr1:53873252 1.10E-67 dispersed
Lac13g0345 Lac-Chr13:2467957 Lac9g2245 Lac-Chr9:41820390 4.00E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85846 PF07714 PK_Tyr_Ser-Thr 7.50E-64 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0345 - - - 0.0